Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00488 ATGGCCGAAGTTATCACCAACATTCCCTCCGATTCTCTCGACAAATCCCCATCCTCTTCCGCCCCACCTCCACCTCCCCCTCCCCCGCCACCTCCTCCCTCCTCCACATCCGCCGCCGCTGATATCGATCTCCCTCCCTCTCATCATCCGCCTCCACACCCCTCCTATCGCCGTGGCAGGGACCGCAGAGATGATAGAGATTTCGATCGCCCTCCTAATCGCCGGGATTACTATGAGCGGAACACGTCGCCTCCGCAAAGAGATAGAGATAGAGATAGAGAATTCAAGCGCCGGCGTAGTCCCAGTCCTCCCTATCGTGACCGCCGTTATTCTCCACCGCGGCGTTCTCCTCCGCATTACAACTACAAGCGCTCTAGGAGAGGTGGCAGCCCCCGAGGCGGTTATGGACCCGACGACAGAAGATCTGGGTATGATCATTATGGTGGGTATGATAGGGGTGGAAGAGGTGGTTATGCTGATGACAGGTCTTATGGTAGGTTTGGACACCGTTCTGCAGCAGGATATCAAAATGGGATCCCTGATATGGAATCCAATCGTGGTTACGGAAACTTTCAAAGTAGCGGTGCACAAAGAGAAGGGTTGATGTCCTATAAGCAATTCATTCAGGAGCTTGAGGATGATATACTACCAGCTGAAGCAGAACGTAGGTATCAAGAATATAGATCAGAGTACATTTCTACCCAAAAAAAAGCTTATTTCAATGCTCATAAGGATGAGGAGTGGTTGAAAGATAAATACCATCCAACAAATTTGCTTAAAGTCATTGAAAGGAGGAATGAAAGTGCTCGACAGCTGGCAAAAGATTTTTTGCTTGATTTGCAGAGTGGTACTTTTGATCTAAATCCGGGTTTAAGTGCCTCTTCATCCAGCAAATCAGCGCAAGCTAGCGAACCAAATTCAGAGGAGGAAACAGACGGCAAACGGAGAAGACACGGAAGGGGTTTTATCAAACAGAGTGATTTCACAGCTGCTCCTAAGACTCATCCTATCAGTTCTGAACCTAGACGAATACAAGCAGATGTTCAACTGTCTCAGGCCCTTGTTCGCAAGCTTGATGCAGAAAAGGGAATTGGAGATAATATTTTATGCAGCAGTGATCATAATAAAAATGGTGATAAGTCTCACAGTGGATCTGTGGGTCCAGTAGTAATTATACGAGGCCTAACATCTGTTAAGGGTTTAGAGGGTGTTGAGCTTTTGGACACACTTGTTACATATCTGTGGCGGATTCATGGTGTAGATTATTATGGCATGATTGAGACTAATGAGGCTAAGGGTTTTAGGCATGTGAGGCCAGAAAAAACAGGGAATGAAGAAACAGGTAAGTCAGGGTCTGAATGGGAAAAAAAACTTGACTCATTTTGGCAGGGAAGGTTGAATGGTCAGGATCCATTGGAAGTAATGGCTGCGAAGGAGAAAATAGATGCTGCAGCAGTTGAAATATTGGATCCATATGTTAGAAAAATCAGGGATGAAAAGTATGGATGGAAGTATGGTTGTGGAGCTAAGGGCTGCACAAAGCTTTTTCATGCTGCTGAATTTGTGTACAAACATCTGAAGCTAAAACACCCAGAGCTTGCTGTTGAACAAACTTCAAAATTGCGTGAGGATCTCTATACTCAAAATTACATGAATGATCCAGATGCTCCTGGTGGAAAGCCTGTCATGCAGCAATCTCAGGACAAGCCTTTAAGGCAAAGGTTAGGTCTGGAGGGCCGATTGAGAGATGATCGTGGTAATCATCGAGACCATGAACAGAATGACAGAATAAATGGAGATAGACCCGATTCCCCATCCCGTGAAAGGCAGTCTAAAACACTTGAGATGGGAGACCAGAATGAAACAATGTACGACACTTATGCAGGGCATGGTGTACCTCCTTTTGCCTCAGATATGCCTCCTCCGCCAGTATTGATGCCTGTACCTGGTGCTGGGCCATTAGGACCCTTTGTTCCTGCGCCACCAGAAGTTGCAATGCAGATGCTAAGAGAACAAGGAGGACCATCTTCATACGATGCCTCCGGAATACCGATGCTGTCTGGCCCTCATATGGGTGGACCGGCACCAATAATTGCTGTAAATCCGGCATTTAGACCAGATCCTCGGAAGATGAGAAGTTATCAAGATTTGGATGCTCCAGATGACGAGGTCACTGTGATAGACTATCGGAGTTTGTAA 2199 0.4657 MAEVITNIPSDSLDKSPSSSAPPPPPPPPPPPPSSTSAAADIDLPPSHHPPPHPSYRRGRDRRDDRDFDRPPNRRDYYERNTSPPQRDRDRDREFKRRRSPSPPYRDRRYSPPRRSPPHYNYKRSRRGGSPRGGYGPDDRRSGYDHYGGYDRGGRGGYADDRSYGRFGHRSAAGYQNGIPDMESNRGYGNFQSSGAQREGLMSYKQFIQELEDDILPAEAERRYQEYRSEYISTQKKAYFNAHKDEEWLKDKYHPTNLLKVIERRNESARQLAKDFLLDLQSGTFDLNPGLSASSSSKSAQASEPNSEEETDGKRRRHGRGFIKQSDFTAAPKTHPISSEPRRIQADVQLSQALVRKLDAEKGIGDNILCSSDHNKNGDKSHSGSVGPVVIIRGLTSVKGLEGVELLDTLVTYLWRIHGVDYYGMIETNEAKGFRHVRPEKTGNEETGKSGSEWEKKLDSFWQGRLNGQDPLEVMAAKEKIDAAAVEILDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHPELAVEQTSKLREDLYTQNYMNDPDAPGGKPVMQQSQDKPLRQRLGLEGRLRDDRGNHRDHEQNDRINGDRPDSPSRERQSKTLEMGDQNETMYDTYAGHGVPPFASDMPPPPVLMPVPGAGPLGPFVPAPPEVAMQMLREQGGPSSYDASGIPMLSGPHMGGPAPIIAVNPAFRPDPRKMRSYQDLDAPDDEVTVIDYRSL 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00488 732 ProSitePatterns Zinc finger C2H2 type domain signature. 507 530 IPR013087 -
Vifa4g00488 732 MobiDBLite consensus disorder prediction 289 339 - -
Vifa4g00488 732 MobiDBLite consensus disorder prediction 549 619 - -
Vifa4g00488 732 MobiDBLite consensus disorder prediction 18 36 - -
Vifa4g00488 732 MobiDBLite consensus disorder prediction 57 114 - -
Vifa4g00488 732 Pfam SERRATE/Ars2, N-terminal domain 205 289 IPR021933 -
Vifa4g00488 732 MobiDBLite consensus disorder prediction 1 194 - -
Vifa4g00488 732 MobiDBLite consensus disorder prediction 573 615 - -
Vifa4g00488 732 MobiDBLite consensus disorder prediction 289 304 - -
Vifa4g00488 732 PANTHER ARSENITE-RESISTANCE PROTEIN 2 57 730 IPR039727 GO:0006397
Vifa4g00488 732 Pfam Arsenite-resistance protein 2 445 632 IPR007042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00488 Vifa-Chr4 136083330 136089096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00488 71 732 C2H2 Transcription Factor Family AT2G27100 62.996 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00488 K27103 - gmx:100811300 989.178