Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00483 ATGAAGAGCAAAAGAGGAACCAAACAACAAATGGTGGAAGTAGAAGAAGCTCCATTTATAGAGGAGTTACAAGACATAGGTGGACTGAACAAGAAGGGAAAACAAGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTTAAATATTGGGGAAAGGATGCAACTTTAAATTTTCCGATAGAAACTTATGGAAAAGAGTTTGAGGAAATGGACAAAGCATCAAAAGAAGAGTATTTGGCTTCATTGCGGCGCCAAAGCAGTGGTTTCTCTAGAGGCATTTCTAAATACCGTGGAGTAGCTAGGCATCACCACAATGGTCGGTGGGAAGCTCGCATTGGAAGAGTTTGTGGTAACAAGTATCTCTACTTGGGCACATACAAAACTCAAGAGGAAGCAGCAGTGGCATATGATATGGCAGCAATAGAGTATAGAGGAACAAATGCAGTGACAAATTTTGACATAAGCAACTATATTGACAAATTGAAGAAGAAGAACAAAAATGTCGAAGAAACAGAACAAACTCAGCCAGAAACAACAACGATAACGGAAATTGTTCCTAATAATTCCTCTGATTCCGAAGAAACCTCACAAGAACAAACACCAATAGCTACACCAGCGCCGCCACCACCGCCAGAAGAAAATCTACAACAAGGTGAACCTTGTCAGCAACAAGTTCAACAACAACAGCAGCAGAATGTTGGTCCAGTTGTTCAAGAACACACATTGGTTAATGTCATGGACATTTATCTTGACCAAGACCTACCATGGAGCTACATGTACAACGGGTTATTAGAGTTTCAAGACACAAACATGTCATTCAGCAATGACAAAGATTTAATTGATATATTTGACGGAACAGGCTTTGTGGAAGACATTGGTTTAATGTTCAACACAGAAGAGCCTTGTGTTGGCGAAACTGATATCAATATCAGTGAAGTTTTGGAGGGAATTGATTTATTAAATGGAAATGCTGAAAACATGGTTGTGGATAATAATGATAATAACAACATTAACAAGGAGAAGGAAATGTTGTCCTTAGAATCATCTTCTTCACCATCATCTTCAACAACTACAGTTTCTTTGTAA 1104 0.3904 MKSKRGTKQQMVEVEEAPFIEELQDIGGLNKKGKQGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYGKEFEEMDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGTNAVTNFDISNYIDKLKKKNKNVEETEQTQPETTTITEIVPNNSSDSEETSQEQTPIATPAPPPPPEENLQQGEPCQQQVQQQQQQNVGPVVQEHTLVNVMDIYLDQDLPWSYMYNGLLEFQDTNMSFSNDKDLIDIFDGTGFVEDIGLMFNTEEPCVGETDINISEVLEGIDLLNGNAENMVVDNNDNNNINKEKEMLSLESSSSPSSSTTTVSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00483 367 SUPERFAMILY DNA-binding domain 30 67 IPR016177 GO:0003677
Vifa4g00483 367 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 229 - -
Vifa4g00483 367 PRINTS Ethylene responsive element binding protein signature 141 161 IPR001471 GO:0003700|GO:0006355
Vifa4g00483 367 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vifa4g00483 367 ProSiteProfiles AP2/ERF domain profile. 3 65 IPR001471 GO:0003700|GO:0006355
Vifa4g00483 367 MobiDBLite consensus disorder prediction 178 207 - -
Vifa4g00483 367 Gene3D AP2/ERF domain 100 161 IPR036955 GO:0003700|GO:0006355
Vifa4g00483 367 Gene3D AP2/ERF domain 11 67 IPR036955 GO:0003700|GO:0006355
Vifa4g00483 367 MobiDBLite consensus disorder prediction 222 239 - -
Vifa4g00483 367 ProSiteProfiles AP2/ERF domain profile. 101 159 IPR001471 GO:0003700|GO:0006355
Vifa4g00483 367 Coils Coil 160 180 - -
Vifa4g00483 367 MobiDBLite consensus disorder prediction 173 239 - -
Vifa4g00483 367 FunFam AP2-like ethylene-responsive transcription factor 100 161 - -
Vifa4g00483 367 SMART rav1_2 101 165 IPR001471 GO:0003700|GO:0006355
Vifa4g00483 367 SMART rav1_2 23 71 IPR001471 GO:0003700|GO:0006355
Vifa4g00483 367 Pfam AP2 domain 100 151 IPR001471 GO:0003700|GO:0006355
Vifa4g00483 367 CDD AP2 100 161 IPR001471 GO:0003700|GO:0006355
Vifa4g00483 367 SUPERFAMILY DNA-binding domain 100 161 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00483 Vifa-Chr4 134950167 134954462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00483 36 170 AP2-EREBP Transcription Factor Family AT3G54320 86.667 2.30e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g00483 AP2 9.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00483 - - cam:101488375 351.288