Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00482 ATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAAGCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGAGAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAACTAGGAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACCAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTGCAGATCAGGACAAGTAACTTTTCGCAGCTTCTAGGAACAGTTATGTGTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCTGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACCAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAAAAAGATAATACATTGTGACATCAAGCCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACTAGAGGCTATTTGGCACCAGAATGA 1590 0.378 MLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKLGRDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQIRTSNFSQLLGTVMCGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGPDRLLDWQTRFDIAKNTAQGIAYFHEQCRKKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00482 529 Gene3D Phosphorylase Kinase; domain 1 318 431 - -
Vifa4g00482 529 SUPERFAMILY Protein kinase-like (PK-like) 334 529 IPR011009 -
Vifa4g00482 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vifa4g00482 529 Pfam S-locus glycoprotein domain 76 157 IPR000858 GO:0048544
Vifa4g00482 529 FunFam S-receptor-like serine/threonine-protein kinase 323 431 - -
Vifa4g00482 529 FunFam Protein kinase superfamily protein 432 507 - -
Vifa4g00482 529 Pfam Protein kinase domain 366 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00482 529 Gene3D Transferase(Phosphotransferase) domain 1 432 529 - -
Vifa4g00482 529 PANTHER OS07G0415500 PROTEIN 10 529 - -
Vifa4g00482 529 SMART serkin_6 357 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00482 529 ProSiteProfiles Protein kinase domain profile. 356 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00482 Vifa-Chr4 134556408 134558155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00482 325 529 Receptor kinase-like Gene Family AT5G20050 47.170 3.88e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g00482 Pkinase 3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00482 - - tpra:123904109 974.156