Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00479 ATGATGCGAACTGAAAACCCATCTGGGAATTCATCATCATCACGTGCAGCTTTTGGTCACCCGGACTCCAAACCAGTGAGACACGGTTCAAACTCAAAGGCTGATTTTGAAGCTTTGACTATGTCTCAGAAGGAAATCAGTGATGAAGATGCTAGGAAACTCAATCCGTACTGGAAATTACCTCAACTAGCTGTTTTTGGGAGAGGTGCTTCACTTTTACCGTTAGGTATTGTTCTTCTTGTTACTGCTGTTAAGGATGCTTATGAGGATTGGAGGAGACATAGGTCAGATAAAGTTGAGAATAATAGTGATCCCACCGGGGTTGCTTATGTTCAGACGCTTAATCTAGATGGGGAGTCGAATTTGAAAACTAGGAATATTTATGGATTTCAAGCAACAATGGAGATTGATGGGAAGAGATTGTCGCTTGGTTCTTCGAATATTGTGCTTAGAGGTTGTGAGCTTAAGAATACTAGTTGTGTGGTTGGTGTTGCGGTGTATTGTGGTCGTGAGACGAAAGCTATGCTCAACAACTCGGGGGCTCCGTCTAAGAGGAGTCGGCTTGAGACTCAGATGAACTCTGAGATCATCATGCTTTCGGTCTTTCTTGTAGCTTTGTGTACAGTCACTTCAGTTTGTGCTGGTGTTTGGTTAAGGCAAAACAAGAATAAATTGAATCTATTGCCTTATTATAGGAAATTGGATGTTTCGAAGGGAAAAGAGGAAAGTTATCAGTATTATGGATGGGGTGTGGAAATTGTTTTCACATTTCTTATGTCAGTTATAGTTTTCCAGATTATGATTCCTATATCCTTGTACATTTCTATGGAGCTTGTCCGTGTTGGTCAGGCCTATTTCATGATCAAGGATTCTAGATTGTATGATGAGGCGACAAATTCAAAGTTTCAGTGCAGGGCCTTGAATATCAATGAAGATTTAGGGCAGATTAAATATGTTTTTTCAGACAAAACCGGTACTCTCACTGAGAACAAGATGGAGTTTCAATGTGCGAGTATCTGGGGTGTTGATTACAGTTCTGCAAAAGCGGGTCTTGAGAATGAGCAACTTGAATACTCTCTTCGAGTGAATGGAAAGGTCTTGAAGCCAAAGATGAAGCATGCAATACTATTGTGCCTCTTGTTATCGACACAGCTGACCCTACAGTCAAGCTGGTAG 1176 0.4116 MMRTENPSGNSSSSRAAFGHPDSKPVRHGSNSKADFEALTMSQKEISDEDARKLNPYWKLPQLAVFGRGASLLPLGIVLLVTAVKDAYEDWRRHRSDKVENNSDPTGVAYVQTLNLDGESNLKTRNIYGFQATMEIDGKRLSLGSSNIVLRGCELKNTSCVVGVAVYCGRETKAMLNNSGAPSKRSRLETQMNSEIIMLSVFLVALCTVTSVCAGVWLRQNKNKLNLLPYYRKLDVSKGKEESYQYYGWGVEIVFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSAKAGLENEQLEYSLRVNGKVLKPKMKHAILLCLLLSTQLTLQSSW 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00479 391 ProSitePatterns E1-E2 ATPases phosphorylation site. 322 328 IPR018303 -
Vifa4g00479 391 SUPERFAMILY HAD-like 307 348 IPR036412 -
Vifa4g00479 391 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 60 103 - -
Vifa4g00479 391 Gene3D - 317 329 IPR023214 -
Vifa4g00479 391 NCBIfam HAD-IC family P-type ATPase 252 341 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g00479 391 MobiDBLite consensus disorder prediction 1 18 - -
Vifa4g00479 391 Gene3D - 180 316 - -
Vifa4g00479 391 Gene3D - 116 179 - -
Vifa4g00479 391 Gene3D - 330 344 IPR023299 GO:0000166
Vifa4g00479 391 SUPERFAMILY Calcium ATPase, transmembrane domain M 70 376 IPR023298 -
Vifa4g00479 391 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00479 Vifa-Chr4 133698633 133700361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00479 18 384 Primary Pumps ATPases AT5G04930 51.852 4.45e-152 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00479 K14802 - gmx:100791888 524.242