Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00478 ATGCTTATTGAACGAACCTCAGGTTACATAGTCATTGATATTCATGGAGAAAGACAAAGGTTCAATGTCTTGGGTTTGCATGAATTTGATAGTGATCGGAAAAGGATGTCGGTTATATTAGGATACATTGACAATTCAGTGAAACTTTTCGTCAAAGGGGCGGATACATCAATGTTTAGTGTAATCAATAAATCATTGAACACAGATGTAATACAAGCAACAGAAACCCATCTTCACGCCTATTCTTCCATCGGCTTGAGGACGCTTGTTATTGGGATGCGTGACTTGAATCCTTCAGAATTTGATCAATGGCACTTTGCTTTTGAGGCAGCAAGTACTTCTTTGATCGGTAGGGCTGCTTTGCTTCGTAAGGTTGCAGCCAATGTAGAGAATAACCTATGCATATTGGGCGCTACCGCTATCGAAGATAAACTGCAACAAGGTGTGCCGGAATCTATTCAGTCTCTAAGGCAAGCTGGTATTAAAGTATGGGTATTGACCGGTGACAAACAGGAAACCGCCATTTCGATTGGCTACTCCTCAAGGCTACTGACAAGCGGCATGACTCAATTTAGAATTAAGAGCAATAATCGAGAGTCGTGTAGAAGACATTTACAAGATGCACTTCTCATGTCCAGAAAAAATGAGGTTGGCAATTATTTCGACGGGAATTCCGTTGAGGTTGTTTCAACTCCAATGGCCTTGATTATTGATGGTACAAGCCTTGTATATATTCTTGACAATGAACTTGAAGAAGAGCTCTTTGAACTTTCACAAAGATGTTCTGTTGTTCTATGTTGTCGAGTGGCTCCCTTGCAAAAGGCCGGAATTGTGTCGCTCGTGAAGAAAAGGACAGCTGACATGACTCTAGCCATTGGAGATGGTGCTAATGATGTATCAATGATCCAAATGGCTGATGTTGGGGTCGGCATCAGTGGACAGGAGGGTAGGCAAGCTGTAATGGCTTCCGATTTTGCAATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTATTCATACACGGACATTGGAATTACCAACGACTAGGCTACATGGTGCTATACAATTTTTACAGAAATGCTGTCTTTGTTCTAATTCTATTTTGGTACGTACTCTTCACTGCCTTCACTGTGACAACTGCTATAAATGAATGGAGCAGTGTGTTGTATTCGATAGTCTACACTGCGGTGCCGACAATCGTTGTTGGTATTCTTGACAAGGATCTTAGTAAAAGGACTCTCCTGCATAATCCTCAGCTTTACGGAGCTGGACAAAGACAAGAGGCCTACAACAAAAAATTGTTTTGGTTGATGATAGCCGATACTTTATGGCAAAGCATTGTTGTCTTCTTTGCTCCTCTCTTCGCATATTGGGGAAGCACAATAGATATAGCAAGCATAGGGGATCTTTGGACTCTTTCGGTAGTTATTTTGGTCAATTTGCACTTGGCCATGGATGTAATCAGGTGGAGTTGGATTACTCACGTGTCCATTTGGGGGTCTATCGTTGCAACTTTCATATGTGTCATGATTATTGATGCTATACCGGCACTTCATGGTTACTGGGCTATCTTTGATGTTGCAGGCACTGCATTGTTCTGGTTATGTTTAATTGGAATACAAATAGCAGCATTGCTTCCCCGTTTTGTTGTAAAATTCATTCATCAATATTATTGTCCGAATGATATTCAGATTTCAAGAGAAGTAGAGAAGTTTGAGAATCTGAGGATCAATGGAAATGCAGAGATAGAAATGCTTCACATCTCAAATCCACAAAGATAA 1779 0.4092 MLIERTSGYIVIDIHGERQRFNVLGLHEFDSDRKRMSVILGYIDNSVKLFVKGADTSMFSVINKSLNTDVIQATETHLHAYSSIGLRTLVIGMRDLNPSEFDQWHFAFEAASTSLIGRAALLRKVAANVENNLCILGATAIEDKLQQGVPESIQSLRQAGIKVWVLTGDKQETAISIGYSSRLLTSGMTQFRIKSNNRESCRRHLQDALLMSRKNEVGNYFDGNSVEVVSTPMALIIDGTSLVYILDNELEEELFELSQRCSVVLCCRVAPLQKAGIVSLVKKRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLFIHGHWNYQRLGYMVLYNFYRNAVFVLILFWYVLFTAFTVTTAINEWSSVLYSIVYTAVPTIVVGILDKDLSKRTLLHNPQLYGAGQRQEAYNKKLFWLMIADTLWQSIVVFFAPLFAYWGSTIDIASIGDLWTLSVVILVNLHLAMDVIRWSWITHVSIWGSIVATFICVMIIDAIPALHGYWAIFDVAGTALFWLCLIGIQIAALLPRFVVKFIHQYYCPNDIQISREVEKFENLRINGNAEIEMLHISNPQR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00478 592 NCBIfam phospholipid-translocating P-type ATPase 2 567 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa4g00478 592 SUPERFAMILY Calcium ATPase, transmembrane domain M 341 559 IPR023298 -
Vifa4g00478 592 Pfam Cation transport ATPase (P-type) 12 59 - -
Vifa4g00478 592 FunFam Phospholipid-transporting ATPase 132 332 - -
Vifa4g00478 592 SUPERFAMILY HAD-like 129 340 IPR036412 -
Vifa4g00478 592 Gene3D - 6 111 IPR023299 GO:0000166
Vifa4g00478 592 Pfam Phospholipid-translocating P-type ATPase C-terminal 320 560 IPR032630 -
Vifa4g00478 592 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 572 - -
Vifa4g00478 592 NCBIfam HAD-IC family P-type ATPase 263 378 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g00478 592 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 10 148 IPR023299 GO:0000166
Vifa4g00478 592 Gene3D - 132 332 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00478 Vifa-Chr4 133696117 133698570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00478 1 592 Primary Pumps ATPases AT5G04930 68.919 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00478 K14802 - gmx:100784988 965.681