Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00477 ATGTTCCAAGATCCTTCAATCAAGCTTTTTGGAAGTGATATTCAAATTCATATTCCCATTACTACTCATTCCCACTCTTTCTCCTCTCAGATTCACTCCCCTCCACAACTACCCATCTACATCATGAATGGACTTGAATCGACTAATGCTGATGTTAGTGTTTCTTTGAATGAAGTTTCCAGCAATTCAGCTTATCCACAAGAAGATGCTAATGCTATGCCAAACATGTACGAATCCGGCACTTCGAAACCAGGGACCGAATCAGTTCATAGTACTTATGAACAGAAGACTGCCAGAAGAGATATTGACAATCAAGGAAAAACTTTCAAGAAGCCCGACAAGGTTCTTCCATGTCCTCGATGCAATAGTTTGGAGACAAAGTTTTGCTATTTCAACAATTACAACGTTAACCAACCGAGGCATTTCTGCAAAAACTGTCATAGGTATTGGACAGCTGGGGGAGCAATTCGGAACGTTCCTATTGGAGCCGATTCCAACTCTGCTAGTCCCAGGGAGGAAATTCCTCTTAGTGAGTCACTAGAAACTGTGTTAAATCTCAAGGGCCGTAGAAAAATTGAAACGGATTCTTCTACTGTCAAAGATGATATTGAAGACCCTTCTAGCTTTTCGGCCGAAAATGGAATAGAGCATGTTGGTTTGGCACCACAATACAATGGCTTAATTCCGTTGCATTCACTTCATTATTATTCTGCTCCTCCATGGACTTATCCGTGTTGGAATCCTACGGCATTTAAGCCTGATAACATAACCTCCTCTCCTGCAACCATGATGGCGGTAGAAATACCAATGACACCATCATCATATTGGGGTTGTATGCCAAATTGGGTTGGCCAAATGGAAGAATTTAACGGCATTCAATCACCTTCATCTTCGGTTAGCAGTGGCACATGTTCCGGTAATAGGTCACCAACTTTAGGAAAACATTGTAGAGATGGAAGTACACAAGCAGAAGATACAATGAAACACAATATTTGGGTCCCTAAAACTATCAGAATCAATAATCCAGAAGAAGCCGCAAAGAGTTCTATATGGTCAACTTTGAGAACAAAATCTCAACAGAACAAACCAATTATGAAAGGAGGTGTTTTCAAATCATTTGAAGCTAAATCAAATGCAAGTTCTCGAGATTCAGACGATAATCAAATTCTAAGAGCTAACCCTGCTTCTTTCTCTCGGTCCGGAACTTTTCAAGAAAGCATTTAA 1224 0.4036 MFQDPSIKLFGSDIQIHIPITTHSHSFSSQIHSPPQLPIYIMNGLESTNADVSVSLNEVSSNSAYPQEDANAMPNMYESGTSKPGTESVHSTYEQKTARRDIDNQGKTFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCHRYWTAGGAIRNVPIGADSNSASPREEIPLSESLETVLNLKGRRKIETDSSTVKDDIEDPSSFSAENGIEHVGLAPQYNGLIPLHSLHYYSAPPWTYPCWNPTAFKPDNITSSPATMMAVEIPMTPSSYWGCMPNWVGQMEEFNGIQSPSSSVSSGTCSGNRSPTLGKHCRDGSTQAEDTMKHNIWVPKTIRINNPEEAAKSSIWSTLRTKSQQNKPIMKGGVFKSFEAKSNASSRDSDDNQILRANPASFSRSGTFQESI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00477 407 MobiDBLite consensus disorder prediction 93 109 - -
Vifa4g00477 407 ProSiteProfiles Zinc finger Dof-type profile. 116 170 IPR003851 GO:0003677|GO:0006355
Vifa4g00477 407 MobiDBLite consensus disorder prediction 293 316 - -
Vifa4g00477 407 PANTHER CYCLIC DOF FACTOR 2 3 406 IPR045174 GO:0003700|GO:0006355
Vifa4g00477 407 MobiDBLite consensus disorder prediction 293 321 - -
Vifa4g00477 407 MobiDBLite consensus disorder prediction 375 407 - -
Vifa4g00477 407 ProSitePatterns Zinc finger Dof-type signature. 118 154 IPR003851 GO:0003677|GO:0006355
Vifa4g00477 407 Pfam Dof domain, zinc finger 113 166 IPR003851 GO:0003677|GO:0006355
Vifa4g00477 407 MobiDBLite consensus disorder prediction 65 92 - -
Vifa4g00477 407 MobiDBLite consensus disorder prediction 65 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00477 Vifa-Chr4 133018251 133020501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00477 2 406 C2C2-Dof Transcription Factor Family AT5G39660 30.498 9.40e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa4g00477 zf-Dof 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00477 - - cam:101489693 524.242