Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00476 ATGGCTAAACAACTTCATCATTCACAGAATCTACTCCTTCTAATCTTCTTTCTCTCCATCATCCATCTTTCACACCAGTTACAATTCTCACACTCTCAAACCCTTCTCAAACTCCAACAACTTCTTGGCTACCCTTCATCTCTATCAACCTTAACCACCACCAAAGATTTCTGCAACATTGAACCTACACCTTACTTAACACTAGTCTGCTACGAACAAAACTTAACACAGTTACATCTTGTAGGAAACAACAACAACAACTTCACCACCTCATTGCCTCAAAACTTCAACTCACACACTTTCTTTTCAACACTTTCCACTCTCTCAACCTTGAAAGTCCTCTCTTTGGTTTCTCTTGGCTTATGGGGCCCTCTACCTGAAACCATAGCTGAATTGTCCTCATTGGAGATACTCAACATTAGCTCAAACTACTTCACTGGAGAAATACCAGTTCACCTTTCATATCTCAACAATCTTCAATCACTAGTACTTGATGATAACAACTTCAATGGTGAAATTCCAAACTTGTTAACCTCTCTTCAAGGTTTGGTTGTTCTTAGCATGAAGAAGAATTTTCTTACAGGTAACTTGCCAAATTCAATGAATGATCTTGTTACTCTTAGAGTTTTGGATCTGTCAAATAATCAACTGTTTGGTGAATTACCTCATTTTCATAACTTGGTTAACCTTCAAGTTCTTCACTTGGAAAACAACTTATTAGGACCTCATTTTCCTTCTCTTCCTACAAAGCTAGTTTCACTTGTGCTTAGAAACAACAGTTTTAGGCTTGGTGTACCTTCTAATATAAGTTCATTCTATCAGCTTCAAAAATTGGACCTTTCATTGAATGGCTTTGTAGGGCCATTTCCGCCGTCTTTGTTGTCGCTTCCTTCCATAAATTACATCGATGTTTCATCGAATAAGTTCACTGGTATGCTTTTCGAGAATTTTTCGTGTAATGGGGATCTTCGGTTTGTGAATTTGTCTTCAAATCTTTTGAAAGGTGAACTGCCTAGTTGTTTGAGACAGAAAACAAAGGTTGTTTTGTATGCTAGAAACTGTTTATCAAATGAGAAGAAACAAGCTCAACATAGTTATAGTTTTTGTAGCAGTGAAGCTCTCGCCGTGAATATTTCACCGCGTCAACAACAGAAACATAAAGGAACAACAAGTAAAGCAGTGCTTGTGTCATCAAGTATTGGAGTTGTTGGAGTATTGATTGTTGCAGTTGTTGTTTTGGTTGTTAATCAAGTTCATAAAACGAATGTTTCGAAAACACCTGAGATGTCTACTTTGGAACATGTTATTATTAGCCAAATACAGAATGAAGATAGAGGGAAAACTACTGCAAGGTCTATAGTAGAGCATATCATCAGAAGAGTTCCTGATAAAAATGCTATGAAAACATTGACAAGATTCATAAAGGAACATATCGCGAGCTTACTCGGTAACAGACGCCTTTCAAGGTCACCTTCAAGGTCCATAATAGAACATGTATCATCAGTAAACACTGCAAAACTACTCACAGATGCAAGGTGTATATCAGAAACAATGAAGATGGGAACTGGTCTTCCTGCATATAGGACCTTTTCGTTGGACCAACTTAAGGAAGCTACAAATAATTTTGAAGAGTCAAGTCTCATAAGTGAAGGTCCACTTGGTCAGATATATAAAGGGGTTCTCTCTGATGGGATGAATATTACTATTAGAGGAATGAAGATAAGAAAGAAGCACAGTCCTCAAGCCTATATGCACCATGTTGAGTTGATTTCAAAACTTAGGCATTCACACTTGGTTAGTTCACTTGGACATTCCTTCGAGTGCAACCAAGATGATTCAAGTGTCAATACTGTATTTCTCATTTTCGAGTTTGTTCAAGATAAAAGTTTAAGAAGCCGCATCTCAGGATCAAACGGAGAAAAGCTTTGTTGGACACAGAGAATAGCAGCCACAATTGGAGTAGTGAAAGGCATTCAATATTTGCATACAGGGATAGTGCCTGGACTATATTCAAATAATATCAAGATAACTGATATTCTTTTGGATAACAATCATAATGTTAAAATAAGCAGTTATAATCTTCCGATTTACGCCGAAAACAAAAGAATGGTCAGCAATGGAACTTCTCATGGAGTAAAAGGAAATCTCCAAGCAAGGATGAATGATGGAGACAAGAATGATGTGTATGATATCGGAGTAATCTTGCTAGAAATCATTCTTGGACGACCGATAATGTTCCACAATGAAGTGGGGACATTAAAAGATCTTTTACATGTAAGCATAAAAACCGATGATATAGCGAGAAGGAGTATTGTAGACCCATTTGTTCACAAGGAATGTTCAGATGAATCGTTAATGAAAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGAACCAAATGAAAGACCTTCTGTCGAAGATATTCTTTGGAATTTGCAGTTTGCAGCACAAGTTCAGAATTCATGGAGAAGAGAAACAAGTGATTATAGAGACTCACCTAAATCAACCTCAAGAGAGACAAAGTTACTATGA 2535 0.3712 MAKQLHHSQNLLLLIFFLSIIHLSHQLQFSHSQTLLKLQQLLGYPSSLSTLTTTKDFCNIEPTPYLTLVCYEQNLTQLHLVGNNNNNFTTSLPQNFNSHTFFSTLSTLSTLKVLSLVSLGLWGPLPETIAELSSLEILNISSNYFTGEIPVHLSYLNNLQSLVLDDNNFNGEIPNLLTSLQGLVVLSMKKNFLTGNLPNSMNDLVTLRVLDLSNNQLFGELPHFHNLVNLQVLHLENNLLGPHFPSLPTKLVSLVLRNNSFRLGVPSNISSFYQLQKLDLSLNGFVGPFPPSLLSLPSINYIDVSSNKFTGMLFENFSCNGDLRFVNLSSNLLKGELPSCLRQKTKVVLYARNCLSNEKKQAQHSYSFCSSEALAVNISPRQQQKHKGTTSKAVLVSSSIGVVGVLIVAVVVLVVNQVHKTNVSKTPEMSTLEHVIISQIQNEDRGKTTARSIVEHIIRRVPDKNAMKTLTRFIKEHIASLLGNRRLSRSPSRSIIEHVSSVNTAKLLTDARCISETMKMGTGLPAYRTFSLDQLKEATNNFEESSLISEGPLGQIYKGVLSDGMNITIRGMKIRKKHSPQAYMHHVELISKLRHSHLVSSLGHSFECNQDDSSVNTVFLIFEFVQDKSLRSRISGSNGEKLCWTQRIAATIGVVKGIQYLHTGIVPGLYSNNIKITDILLDNNHNVKISSYNLPIYAENKRMVSNGTSHGVKGNLQARMNDGDKNDVYDIGVILLEIILGRPIMFHNEVGTLKDLLHVSIKTDDIARRSIVDPFVHKECSDESLMKMMEICVRCLSSEPNERPSVEDILWNLQFAAQVQNSWRRETSDYRDSPKSTSRETKLL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00476 844 Pfam Protein kinase domain 543 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00476 844 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 249 374 - -
Vifa4g00476 844 ProSiteProfiles Protein kinase domain profile. 542 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00476 844 SUPERFAMILY RNI-like 69 348 - -
Vifa4g00476 844 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 102 197 - -
Vifa4g00476 844 ProSiteProfiles Leucine-rich repeat profile. 206 228 IPR001611 GO:0005515
Vifa4g00476 844 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 112 836 - -
Vifa4g00476 844 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 625 829 - -
Vifa4g00476 844 Gene3D Transferase(Phosphotransferase) domain 1 626 838 - -
Vifa4g00476 844 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 516 624 - -
Vifa4g00476 844 Gene3D Ribonuclease Inhibitor 153 246 IPR032675 -
Vifa4g00476 844 SUPERFAMILY Protein kinase-like (PK-like) 521 815 IPR011009 -
Vifa4g00476 844 Gene3D Ribonuclease Inhibitor 247 377 IPR032675 -
Vifa4g00476 844 Gene3D Phosphorylase Kinase; domain 1 504 624 - -
Vifa4g00476 844 Gene3D Ribonuclease Inhibitor 30 152 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00476 Vifa-Chr4 133014151 133017613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00476 44 823 Miscellaneous Gene Families AT3G03770 49.809 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vifa4g00476 Pkinase 1.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00476 - - lja:Lj0g3v0004239.1 1166.76