Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00440 ATGGACGATTACACGAGAGAGATGATGGACCTCAAAACCCTCGTGACTCGCACTCTTGAGAAGAAAGGCGTTCTCGCTAGGATCCGAGCTGAATTAAGAGCTAGTGTCTTTGAAGCTATCGAAGAAGAAGATCGTGTCATCGAAAAGGATCAAGCTCTGCCTCCTGCATTGTTAGGTAGCTGTAACGATCGTGCTAAACAGCTTCACGCTTCTCCTTCTGGTAGACTTCTTACTGCACTGGTATGTGAATACCTTGACTGGGCACAGCTTACTCACTCGCTAAAAGTTTATCTTCCAGAATGTAATTTGGAGAAAGATTTTTGGAAGTCTGAGTTGAAAGAGTTTAGTAGCAAAAATGGATATGATCTTAATAGAAATGGAGACAGTCCCGTGCTCTTGGATGTGCTTGAAGGATTCTTGAAATTTGAGAACTTATCCCAAGCAAGGGCTAGTGGTAGGAGGTTTACTACTTCAGAAACTGAGCCTTTGCCAAACTCAGAATCACGGAACACGCGAAGGCATTCTTCATCATCTGTTGCTGGTGGCTTACCTCCACTAGGAAGGTGCATAGCTATACTCAATTCTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCAACACTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCGAACAAGAATAATAATAGGGAAACGTTGGTTTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGCTGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTACTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTGAACTTACAATAGGAATAGCAAGGGGACTTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGATGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1929 0.3992 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQALPPALLGSCNDRAKQLHASPSGRLLTALVCEYLDWAQLTHSLKVYLPECNLEKDFWKSELKEFSSKNGYDLNRNGDSPVLLDVLEGFLKFENLSQARASGRRFTTSETEPLPNSESRNTRRHSSSSVAGGLPPLGRCIAILNSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSAILNAVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEYMSNGTLASLLFNADEKQKPSWKLRLELTIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNDALDDKEKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00440 642 MobiDBLite consensus disorder prediction 151 178 - -
Vifa4g00440 642 ProSitePatterns Protein kinases ATP-binding region signature. 349 376 IPR017441 GO:0005524
Vifa4g00440 642 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 424 628 - -
Vifa4g00440 642 Pfam Protein tyrosine and serine/threonine kinase 345 620 IPR001245 GO:0004672|GO:0006468
Vifa4g00440 642 SMART serkin_6 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00440 642 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 200 632 - -
Vifa4g00440 642 Gene3D Transferase(Phosphotransferase) domain 1 424 628 - -
Vifa4g00440 642 MobiDBLite consensus disorder prediction 151 179 - -
Vifa4g00440 642 Gene3D - 59 138 - -
Vifa4g00440 642 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
Vifa4g00440 642 SUPERFAMILY Protein kinase-like (PK-like) 324 633 IPR011009 -
Vifa4g00440 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vifa4g00440 642 ProSiteProfiles Protein kinase domain profile. 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00440 642 Pfam LisH 77 103 IPR006594 GO:0005515
Vifa4g00440 642 Gene3D Phosphorylase Kinase; domain 1 305 423 - -
Vifa4g00440 642 FunFam S-receptor-like serine/threonine-protein kinase 312 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00440 Vifa-Chr4 120007500 120011090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00440 329 632 Receptor kinase-like Gene Family AT1G60800 38.629 8.21e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g00440 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00440 - - vra:106773297 665.225