Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00426 ATGTTGATTCCACTTGCAGTTGTTGATGATGTTGCTATCTTGGATCCTCGTACCCACAACAACATGTTACACCCTGTTTATGTTCTCTTTGATTCTCGTACCATGTCTCACTACCACCACCCAACAACACCACCACCACCACCTTGGTCTGTCAACATGTACAACAATGTCCCAAGAAGATTAATGTCTCACTACCACCACCCAACAACACCACCACCACCACCTTGGTCTGTCAACATGTACAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTTCCAAGAAGATTAATGTCTCACAACGGCAACAACGTTCCAAACGGCAACAACGTTTCATCAAGATTAATGTCTCACAACGGCAACAACGTTTCATCAAGATTAATGTCTCACAACCGCAACAATGTTTCATCAAGATCCACTTCATCAACGAGCCGCAACAACGTTTCATCAAGATTCACTTCATCAACCGTGTCTATGGTAGATGAAACTCTTGTCTATGATTCTACTATCAACAGCAACATTCCAAGAACACGCTCATTTAATCTCCACCACAACAACAATGGTACTAGAGCTTCTTCTTCCCCTGTGAACGGTGGTCAAAATACTAGAAACTCTGCTTCTGTCTTGATGGGTGTTCAAGAACATGTTACAACATCAACAACAGATGCAGAATCCATCTGTTGCATTTGTCTTGTTCACTTGTCTAATGCTTCTTCCACGCCAATTCAGTTGCGCTGCTCCCATCTTTTTCACACTGACTGTATTCAGAAATGGGTTAATATCAGACAAACGTGTCCACTCTGTCGGGCCGATGTTTAG 828 0.4263 MLIPLAVVDDVAILDPRTHNNMLHPVYVLFDSRTMSHYHHPTTPPPPPWSVNMYNNVPRRLMSHYHHPTTPPPPPWSVNMYNNVPRRLMSHNHNNVPRRLMSHNGNNVPNGNNVSSRLMSHNGNNVSSRLMSHNRNNVSSRSTSSTSRNNVSSRFTSSTVSMVDETLVYDSTINSNIPRTRSFNLHHNNNGTRASSSPVNGGQNTRNSASVLMGVQEHVTTSTTDAESICCICLVHLSNASSTPIQLRCSHLFHTDCIQKWVNIRQTCPLCRADV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00426 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 275 IPR013083 -
Vifa4g00426 275 ProSiteProfiles Zinc finger RING-type profile. 230 272 IPR001841 -
Vifa4g00426 275 MobiDBLite consensus disorder prediction 178 206 - -
Vifa4g00426 275 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 137 275 IPR044675 -
Vifa4g00426 275 MobiDBLite consensus disorder prediction 97 157 - -
Vifa4g00426 275 SUPERFAMILY RING/U-box 224 275 - -
Vifa4g00426 275 SMART ring_2 230 271 IPR001841 -
Vifa4g00426 275 Pfam Ring finger domain 230 272 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00426 Vifa-Chr4 115218937 115219764 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00426 211 275 C3H Transcription Factor Family AT1G80400 43.077 1.67e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00426 - - psat:127112616 151.369