Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00418 ATGTTGATTCCACTTGCAGTTGTTGATGATGTTGTTATCTTGGATTTAGGTCAACAACATCCTCGTACCCACAACAACATGTTACACCCTGTGTATGTTCTCTTTGATTCTCGTACCATGTCTCACTACCACCACCCAACAACAACACCACCACCACCTTGGTCTGTCAACATGTACAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTCCCAACAAGATTAATGTCTCACAACCAGAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTTTCATCAAGATCCACCTCATCAACGAGCCGCAACAACGTTTCATCAAGATTCACTTCATCAACCGTGTCTGTGGTAGATGAAACTCTTGTCTATGATTCTACTATCACCGGCAACATTCCAAGAACACGCTCATTTAATCTCCACCACCACAACAATGGTACTAGAGCTTCTTCTTCCCCTGTGATCGGTGCTGCTGTCTTGATGGGTGTTCAAGAACATGTTACAACATCAACAACAGATGCAGAATCCATCTGTTGCATTTGTCTTGCTCACTTGTCTAATGCTTCTTCCACGCCAATTCGGTTGCGCTGCTCTCATATATTTCACACTGAATGCATTCAGAAATGGGTTAATATCAGACAAACGTGTCCACTCTGTCGGGCTGATGTTTAG 723 0.4274 MLIPLAVVDDVVILDLGQQHPRTHNNMLHPVYVLFDSRTMSHYHHPTTTPPPPWSVNMYNNVPRRLMSHNHNNVPRRLMSHNHNNVPTRLMSHNQNNVPRRLMSHNHNNVSSRSTSSTSRNNVSSRFTSSTVSVVDETLVYDSTITGNIPRTRSFNLHHHNNGTRASSSPVIGAAVLMGVQEHVTTSTTDAESICCICLAHLSNASSTPIRLRCSHIFHTECIQKWVNIRQTCPLCRADV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00418 240 Pfam Ring finger domain 195 237 IPR001841 -
Vifa4g00418 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 240 IPR013083 -
Vifa4g00418 240 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 107 240 IPR044675 -
Vifa4g00418 240 ProSiteProfiles Zinc finger RING-type profile. 195 237 IPR001841 -
Vifa4g00418 240 SMART ring_2 195 236 IPR001841 -
Vifa4g00418 240 MobiDBLite consensus disorder prediction 104 124 - -
Vifa4g00418 240 SUPERFAMILY RING/U-box 189 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00418 Vifa-Chr4 112211968 112212690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00418 173 240 C3H Transcription Factor Family AT1G80400 41.176 8.17e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00418 - - psat:127112616 175.252