Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00417 ATGTTGATTCCACTTGCACTTGTTGATGATGTTGCTATCTTGGATCCTCGTACCCACAACAACATGTTACACCCTGTGTATGTTCTCTTTGATTCTCGTACCATGTCTCACTACCACCACCCAACAACAACACCACCACCACCTTGGTCTGTCAACATGTACAACAATGTCCCAAGAAGATTAATGTCTGACAACCACAACAATGTCCCAACAAGATTATTGTCTCATAACCACAACAATGTCCCAAGAAGATTAATGTCTCACAACCAGAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTTCCAACAAGATTAATGTCTCACAACCAGAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTTCCAACAAGATTAATGTCTCACAACCAGAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTTCCAACAAGATTAATGTCTCACAACCACAACAACGTTTCATCGAGATTCACTTCATCAACGAGCCGCAACAACGTTTCATCAAGATTCACTTCATCAACCGTGTCTGTGGTAGATGAAACTCTTGTCTATGATTCTACTATCACCAGCAACATTCCAAGAACACGCTCATTTAATCTCCACTACAACAACAATGGTACTAGAGCTTCTTCTTCCCCTGTGATCGGTGTTCAAGAACATTTTACAACATCAACAACAGATGCAGAATCCATCTGTTGCATTTGTCTTGTTCACTTGTCTAATGCTTCTTCCACGCCAATTCGGTTGCGCTGCTCTCATCTATTTCACACTGAATGCATTCAGAAATGGGTTAATATCAGACAAACGTGTCCACTCTGTCGGGCCGATGTTTAG 906 0.4117 MLIPLALVDDVAILDPRTHNNMLHPVYVLFDSRTMSHYHHPTTTPPPPWSVNMYNNVPRRLMSDNHNNVPTRLLSHNHNNVPRRLMSHNQNNVPRRLMSHNHNNVPRRLMSHNHNNVPTRLMSHNQNNVPRRLMSHNHNNVPTRLMSHNQNNVPRRLMSHNHNNVPTRLMSHNHNNVSSRFTSSTSRNNVSSRFTSSTVSVVDETLVYDSTITSNIPRTRSFNLHYNNNGTRASSSPVIGVQEHFTTSTTDAESICCICLVHLSNASSTPIRLRCSHLFHTECIQKWVNIRQTCPLCRADV 301
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00417 301 ProSiteProfiles Zinc finger RING-type profile. 256 298 IPR001841 -
Vifa4g00417 301 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 175 301 IPR044675 -
Vifa4g00417 301 SMART ring_2 256 297 IPR001841 -
Vifa4g00417 301 Pfam Ring finger domain 256 298 IPR001841 -
Vifa4g00417 301 SUPERFAMILY RING/U-box 249 301 - -
Vifa4g00417 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 301 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa4g00417 Vifa-Chr4 112193949 112194854 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00417 223 301 C3H Transcription Factor Family AT1G80400 35.443 4.34e-10 58.2