Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00412 ATGTTGATTCCACTTGCAGTTGTTGATGATGTTGCTATCTTGGATCCTCGTACCCACAACAACATGTTACACCCTGTGTATGTTCTCTTTGATTCTCGTACCATGTCTCACTACCACCACCCAACAACAACACCACCACCTTGGTCTGTCAACATGTACAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAATGTCCCAACAAGATTAATGTCTCACAACCAGAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTTCCAAGATCAATGTCTCACAACCACAACAACGTTCCAAGATCAATGTCTCACAACCGCAACAACGTTTCATCAAGATTCACTTCATCAACGAGCCGCAACAACGTTTCATCAAGATTCACTTCATCAACAACCGTGTCTGTGGTAGATGAAACTCTTGTCTATGATTCTACTATCACCGGCAACATTCCAAGAACACGCTCATTTTATCTCCACCACAACAACAATGGTACTAGAGCTTCTTCTTCCCCTGTGATCGGTGTTCAAGAAAATGTTACAACATCAACAACAGATGCAGAATCCATCTGTTGCATTTGTCTTGTTCACTTGTCTAATGCTTCTTCCACGCCAATTCGGTTGCGCTGCTCTCATCTATTTCACACTGAATGCATTCAGAAATGGGTTAATATCAGACAAACGTGTCCACTCTGTCGGGCCGATGTTTAG 720 0.4236 MLIPLAVVDDVAILDPRTHNNMLHPVYVLFDSRTMSHYHHPTTTPPPWSVNMYNNVPRRLMSHNHNNVPTRLMSHNQNNVPRRLMSHNHNNVPRSMSHNHNNVPRSMSHNRNNVSSRFTSSTSRNNVSSRFTSSTTVSVVDETLVYDSTITGNIPRTRSFYLHHNNNGTRASSSPVIGVQENVTTSTTDAESICCICLVHLSNASSTPIRLRCSHLFHTECIQKWVNIRQTCPLCRADV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00412 239 SMART ring_2 194 235 IPR001841 -
Vifa4g00412 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 239 IPR013083 -
Vifa4g00412 239 Pfam Ring finger domain 194 236 IPR001841 -
Vifa4g00412 239 MobiDBLite consensus disorder prediction 102 129 - -
Vifa4g00412 239 ProSiteProfiles Zinc finger RING-type profile. 194 236 IPR001841 -
Vifa4g00412 239 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 111 239 IPR044675 -
Vifa4g00412 239 SUPERFAMILY RING/U-box 187 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00412 Vifa-Chr4 110295653 110296372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00412 176 239 C3H Transcription Factor Family AT1G80400 40.625 3.56e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00412 - - psat:127112616 158.688