Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g00409 | ATGTTGATTCCACTTGCAGTTGTTGATGATGTTGCTATCTTGGATCCTCGTACCCACAACAACATGTTACACCCTGTTTATGTTCTCTTTGATTCTCGTACCATGTCTCACTACCACCACCCAACAACAACACCACCACCTTGGTCTGTCAACATGTACAACAATGTCCCAACAAGATTAATGTCTCACTACCACAACAATGTCCCAACAAGATTAATGTCTCACAACCAGAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTTCCAAGATCAATGTCTCACAACCACAACAACGTTCCAAGATCAATGTCTCACAACCGCAACAACGTTCCAAGATCAATGTCTCACAACCGCAACAACGTTTCATCAAGATTCACATCATCAACGAGCCGCAACAACGTTTCATCAAGATTCACTTCATCCACCGTGTCTGTGGTAGATGAAACTCTTGTCTATGATTCTACTATCACCGGCAACATTCCAAGAACACGCTCATTTAATCTCCACCACAACAACAATGGTACTAGAGCTTCTTCTTCCCCTGTGATCGGTGTTCAAGAAAATGTTACAACATCAACAACAGATGCAGAATCCATCTGTTGCATTTGTCTTGTTCACTTGTCTAATGCTTCTTCCACGCCAATTCGGTTGCACTGCTCTCATCTATTTCACACTGAATGCATTCAGAAATGGGTTAATATCAGACAAACGTGTCCACTCTGTCGGGCCGATGTTTAG | 750 | 0.424 | MLIPLAVVDDVAILDPRTHNNMLHPVYVLFDSRTMSHYHHPTTTPPPWSVNMYNNVPTRLMSHYHNNVPTRLMSHNQNNVPRRLMSHNHNNVPRSMSHNHNNVPRSMSHNRNNVPRSMSHNRNNVSSRFTSSTSRNNVSSRFTSSTVSVVDETLVYDSTITGNIPRTRSFNLHHNNNGTRASSSPVIGVQENVTTSTTDAESICCICLVHLSNASSTPIRLHCSHLFHTECIQKWVNIRQTCPLCRADV | 249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00409 | 249 | SMART | ring_2 | 204 | 245 | IPR001841 | - | |
| Vifa4g00409 | 249 | ProSiteProfiles | Zinc finger RING-type profile. | 204 | 246 | IPR001841 | - | |
| Vifa4g00409 | 249 | SUPERFAMILY | RING/U-box | 197 | 249 | - | - | |
| Vifa4g00409 | 249 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 249 | IPR013083 | - | |
| Vifa4g00409 | 249 | PANTHER | RING FINGER PROTEIN 141-RELATED | 150 | 249 | IPR047126 | - | |
| Vifa4g00409 | 249 | MobiDBLite | consensus disorder prediction | 97 | 141 | - | - | |
| Vifa4g00409 | 249 | Pfam | Ring finger domain | 204 | 246 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g00409 | Vifa-Chr4 | 110125052 | 110125801 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00409 | 186 | 249 | C3H Transcription Factor Family | AT1G80400 | 40.625 | 3.17e-10 | 57.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g00409 | - | - | psat:127112616 | 147.132 |