Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00406 ATGTTGATTCCACTTGCAGTTATTGATGATGTTGCTATCTTGGATCCTCGTACCCACAACAACATGTTACACCCTGTTTATGTTCTCTTTGATTCTCGTACCATGTCTCACTACCACCACCCAACATCAACAACACCACCACCTTGGTCTGTCAACATGTACAACAATGTCCCAAGAAGATTAATGTCTCACAACCAGAACAATGTCCCAAGAAGATTAATGTCTCACAACCAGAACAATGTCCCAAGAAGATTAATGTCTCACAACCACAACAACGTTCCAAGATCAATGTCTCACAACCGCAACAACGTTTCATCAAGATTCACTTCATCAACGAGACGCAACAACGTTTCATCAAGATTCACTTCATCAACAACCGTGTCTGTGGTAGATGAAACTCTTGTCTATGATTCTACTATCACCAACAACATTCCAAGAACACGCTCATTTTATCTCCACCACCACAACAATGGTACTAGAGCTTCTTCTTCCCCTGTGATCGGTGTTCAAGAACACGTTACAACATCAACAACAGATGCAGAATCCATCTGTTGCATTTGTCTTGTTCACTTGTCTAATGCTTCTTCCACGCCAATTCGGTTGCGCTGCTCTCATGTATTTCACACTGACTGTATTCAGAAATGGGTTAATATCAGACAAACGTGTCCACTCTGTCGGGCCGATGTTTAG 690 0.4203 MLIPLAVIDDVAILDPRTHNNMLHPVYVLFDSRTMSHYHHPTSTTPPPWSVNMYNNVPRRLMSHNQNNVPRRLMSHNQNNVPRRLMSHNHNNVPRSMSHNRNNVSSRFTSSTRRNNVSSRFTSSTTVSVVDETLVYDSTITNNIPRTRSFYLHHHNNGTRASSSPVIGVQEHVTTSTTDAESICCICLVHLSNASSTPIRLRCSHVFHTDCIQKWVNIRQTCPLCRADV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00406 229 ProSiteProfiles Zinc finger RING-type profile. 184 226 IPR001841 -
Vifa4g00406 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 229 IPR013083 -
Vifa4g00406 229 SUPERFAMILY RING/U-box 183 229 - -
Vifa4g00406 229 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 76 226 - -
Vifa4g00406 229 SMART ring_2 184 225 IPR001841 -
Vifa4g00406 229 Pfam Ring finger domain 184 226 IPR001841 -
Vifa4g00406 229 MobiDBLite consensus disorder prediction 91 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00406 Vifa-Chr4 110078377 110079066 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00406 166 229 C3H Transcription Factor Family AT1G80400 43.750 3.37e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00406 - - psat:127112616 165.236