Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00402 ATGGAAAATCGCATCTACGCTTCTTACAGCCCTACAAACTACACTGTATCCGGAGCCCCATCCACATCCCCCACCCGATATTACAACCCGGAAACAATGTTCCTCGCTCACTATCGCCGTACCGCCGAAGCAGCCGCTGCTGCTGCCTCCCTCGACATTGCTCCGCCTGGCGTTTCTTCTAGAATCCCCTCTTCTTCAACCGCTAACTTCCTTTCTCACTCTAACCCTTGGGCCTCCGCTTTCACCGCTGCTAATGTTGCCTCTGCTCCACTTGACCTTAAACGCTCTTCTGACGCGCTCTACCATCCAACCATTTTGAGTACAATTGGGCAAAATGAAGCTTGGTACACTACAAACTCACTGGCCAAGCGCCCTAGATACGAAACCGGAAGCACTTTGCCTATTTATCCTCACAGGCCAGGAGAGAGGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAATTTGATCATCCTATTTGGGTTCCTGATGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGTTCCAAGTGAAACTCTTCCTGAGAGACCTGGAGAGCCAGATTGTCCGTTCTTTCTGAAAACTCAAAAATGCAAGTTCGGTTCAAAGTGCAAATTTAATCATCCAAATGTTCCATCTGAAAATGCTGATGTTTCTGGCTTACCCGAGAGGCCACTAGAGCCCCCTTGTGCGTTCTACTTGAAAACTGGAAAATGTAAATATGGTGTTGCATGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTCCTCTGATGAATTGAGCCGTACCATTGAGCAGACACAAACAAATTCTTCTGTGTTTGACGGGGCAATAGGAGATGCACAACCAACTAAGCCTCTTATTTCTCCGCTGTTGCATAATAGCAAAGGGCTTCCCGTGAGACAGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAATTTGGTGCCAGTTGCCGCTACAATCATCCCGACATGAATGCAATTAATCCAGCTATGTCTGCATTGGCCCCATCTGTTTTGGCATCCTCAGCTGCTGCTAATCTTAACATTGGACTTATTAATCCAGCTGCGTCTTTTTATCAAGCTTTTGATCCAAGGCTTTCAAATCCAATGGCTCAGTTGGGCATGACAGAGAGTATCTATCCTCAGCGCCCTGGACAGATTGAATGTGATTTCTTTATGAAAACCGGCATATGTAAATTTGGGGAAAGATGCAAGTACCATCATCCTGTTGACCGTTCAACATCATCGCTGTCAAAACCGCAATCAAATGTTAAACTCACTCCTGCAGGGTTACCAAGAAGAGAGGATGTTGAGCTCTGCCCATATTATTTGAAAACTGGCACATGCAAGTTTGGTGCAACATGCAAGTTTGACCATCCACCACCAGGAGAAGTGATGGAGATGGCCAAGTCACAAGGAACTTCTACAACCAATGGAGAAGAAGAAGAGACCAACGTAAACGTGGCTGGTTCTACCCCGGAACAACCTTTAGATCATGTCTGA 1545 0.4608 MENRIYASYSPTNYTVSGAPSTSPTRYYNPETMFLAHYRRTAEAAAAAASLDIAPPGVSSRIPSSSTANFLSHSNPWASAFTAANVASAPLDLKRSSDALYHPTILSTIGQNEAWYTTNSLAKRPRYETGSTLPIYPHRPGERDCAHYMLTRTCKFGESCKFDHPIWVPDGGIPDWKEVPNIVPSETLPERPGEPDCPFFLKTQKCKFGSKCKFNHPNVPSENADVSGLPERPLEPPCAFYLKTGKCKYGVACKFHHPKDIQIQSSDELSRTIEQTQTNSSVFDGAIGDAQPTKPLISPLLHNSKGLPVRQGEVDCPFYMKTGSCKFGASCRYNHPDMNAINPAMSALAPSVLASSAAANLNIGLINPAASFYQAFDPRLSNPMAQLGMTESIYPQRPGQIECDFFMKTGICKFGERCKYHHPVDRSTSSLSKPQSNVKLTPAGLPRREDVELCPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSTTNGEEEETNVNVAGSTPEQPLDHV 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00402 514 ProSiteProfiles Zinc finger C3H1-type profile. 448 476 IPR000571 GO:0046872
Vifa4g00402 514 FunFam Zinc finger CCCH domain-containing protein 37 98 176 - -
Vifa4g00402 514 SUPERFAMILY CCCH zinc finger 450 475 IPR036855 GO:0046872
Vifa4g00402 514 MobiDBLite consensus disorder prediction 483 506 - -
Vifa4g00402 514 FunFam zinc finger CCCH domain-containing protein 37 395 489 - -
Vifa4g00402 514 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Vifa4g00402 514 MobiDBLite consensus disorder prediction 482 514 - -
Vifa4g00402 514 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Vifa4g00402 514 Gene3D - 230 347 - -
Vifa4g00402 514 Gene3D - 139 228 - -
Vifa4g00402 514 Gene3D - 396 490 - -
Vifa4g00402 514 SUPERFAMILY CCCH zinc finger 196 217 IPR036855 GO:0046872
Vifa4g00402 514 PANTHER PROTEIN PHOSPHATASE RELATED 299 484 - -
Vifa4g00402 514 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Vifa4g00402 514 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Vifa4g00402 514 ProSiteProfiles Zinc finger C3H1-type profile. 397 425 IPR000571 GO:0046872
Vifa4g00402 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Vifa4g00402 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 400 423 IPR000571 GO:0046872
Vifa4g00402 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 336 IPR000571 GO:0046872
Vifa4g00402 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 259 IPR000571 GO:0046872
Vifa4g00402 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 217 IPR000571 GO:0046872
Vifa4g00402 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 450 475 IPR000571 GO:0046872
Vifa4g00402 514 SUPERFAMILY CCCH zinc finger 237 260 IPR036855 GO:0046872
Vifa4g00402 514 SUPERFAMILY CCCH zinc finger 314 337 IPR036855 GO:0046872
Vifa4g00402 514 FunFam Zinc finger CCCH domain-containing protein 37 177 224 - -
Vifa4g00402 514 SUPERFAMILY CCCH zinc finger 400 425 IPR036855 GO:0046872
Vifa4g00402 514 SMART c3hfinal6 397 424 IPR000571 GO:0046872
Vifa4g00402 514 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Vifa4g00402 514 SMART c3hfinal6 448 475 IPR000571 GO:0046872
Vifa4g00402 514 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Vifa4g00402 514 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Vifa4g00402 514 SMART c3hfinal6 139 166 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00402 Vifa-Chr4 107516897 107523258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00402 308 487 C2H2 Transcription Factor Family AT3G02830 33.889 3.32e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g00402 zf-CCCH 1.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00402 - - pvu:PHAVU_011G180700g 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00402 4 107516897 107523258 Vifa4g00402 4 107516897 107523258 ECH