Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g00399 | ATGGGTCGTCGCAAAATTGAGATGGCCAGAATTAAAGACTCAGCTGCAAGACAAGTCACGTTTTCGAAACGTCGAACAGGATTATTCAAAAAAGCAAGCGAACTTGCTGTCTTATGCGGTGCACAAGTTGCTATTGTTGTGCTCTCGCCTGGGAATAAGCCTTATTCTTTTGGGCACCCAAGTGTTGATGCTATTGCATCCAAGTATTTTCAAAAAGAACTCAATCCAAGTGATGTTCTAGAAAACTCTTCTACCATGGAGGATCTGAATCAACAACTTGATGATTTGCAGGCACAGATAAATGTGACTGAAAATGAAGCTAAGGTCCATGATGAGATCCTAAACAAATATAAAGCGGAGAATTTCACTCAACTCAAGGAATTGAAAGATCGGTTTGTTGAGTTTAAGGATATAGTGAAATCACGTATTTGTGATTTTGATATATCACAATCTATGATTGTGATTTTGATATATCACAATCTATGA | 486 | 0.3765 | MGRRKIEMARIKDSAARQVTFSKRRTGLFKKASELAVLCGAQVAIVVLSPGNKPYSFGHPSVDAIASKYFQKELNPSDVLENSSTMEDLNQQLDDLQAQINVTENEAKVHDEILNKYKAENFTQLKELKDRFVEFKDIVKSRICDFDISQSMIVILIYHNL | 161 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00399 | 161 | Gene3D | - | 14 | 84 | IPR036879 | GO:0003677|GO:0046983 | |
| Vifa4g00399 | 161 | SUPERFAMILY | SRF-like | 1 | 72 | IPR036879 | GO:0003677|GO:0046983 | |
| Vifa4g00399 | 161 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
| Vifa4g00399 | 161 | CDD | MADS_MEF2_like | 2 | 69 | IPR033896 | GO:0000977|GO:0045944 | |
| Vifa4g00399 | 161 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
| Vifa4g00399 | 161 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
| Vifa4g00399 | 161 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
| Vifa4g00399 | 161 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
| Vifa4g00399 | 161 | Coils | Coil | 79 | 113 | - | - | |
| Vifa4g00399 | 161 | PANTHER | MADS BOX PROTEIN | 3 | 131 | - | - | |
| Vifa4g00399 | 161 | FunFam | Agamous-like MADS-box protein AGL62 | 13 | 78 | - | - | |
| Vifa4g00399 | 161 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g00399 | Vifa-Chr4 | 106005859 | 106006344 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00399 | 1 | 155 | Type I MADS-box Gene Family | AT2G34440 | 36.471 | 2.86e-32 | 111 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MADS-M-type | Vifa4g00399 | SRF-TF | 1.5e-25 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g00399 | - | - | psat:127135568 | 259.61 |