Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00384 ATGGGACCTCTGATGATTTATTCATGTAACATTGTTTGGTATCTTTTATTGGTTTTATGTGTAGTACTTAGAATCCACCTTGTCCAAGCTAACGGTTGGCTTAGCGCTCATGCAACGTTCTATGGGGCCAATCAAAGTCCAACCAGTCTTGGAGGAGCTTGTGGTTATGATGATACCTTTCATGCTGGATTTGGAGTGAACACTGCAGCAGTAAGCACTATGCTTTTCAGAGAGGGTGAGGTTTGTGGTGCTTGCTACCAAGTGATATGCGACTATAAAATAGACCCAAAATGGTGTCTTAGAAGTCGAAGTGTCACAATAACTGTGACTAATTTTTGTCCTCCAAACAATCACGGTGGATGGTGTGATCCTCCTAACCATCACTTTGATATGTCCATGCCTTCTTTCTTTAACATTGCACGACAAGGCAGTGAAGGCATTGTTCCTGTGGTTTATAGAAGGGTGGCATGCAAAAGAAGAGGTGGAGTTAGGTTTACATTGAAGGGGCAATCAAACTTCAACATGGTGATGATAACAAACGTGGGTGGGAGTGGTGATGTGAAGGGAGTGTGGATGAGAGGATTGAGAAGTGGAGGTTGGTTGGCAATGCATAGAAATTGGGGTGCGAATTGGCAGAGCAGCGCAGATCTAAGGAACCAGAGACTCTCGTTTAAGATTAGTTTGGTTGATGGTAAAACATTAGTGTTTCTCAATGTGGTTCCTTCCAATTGGAGATTTGGACAGACATTTTCATCCCACACTCAATTCTTTTAG 774 0.4276 MGPLMIYSCNIVWYLLLVLCVVLRIHLVQANGWLSAHATFYGANQSPTSLGGACGYDDTFHAGFGVNTAAVSTMLFREGEVCGACYQVICDYKIDPKWCLRSRSVTITVTNFCPPNNHGGWCDPPNHHFDMSMPSFFNIARQGSEGIVPVVYRRVACKRRGGVRFTLKGQSNFNMVMITNVGGSGDVKGVWMRGLRSGGWLAMHRNWGANWQSSADLRNQRLSFKISLVDGKTLVFLNVVPSNWRFGQTFSSHTQFF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00384 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Vifa4g00384 257 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Vifa4g00384 257 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Vifa4g00384 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vifa4g00384 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Vifa4g00384 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vifa4g00384 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Vifa4g00384 257 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Vifa4g00384 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Vifa4g00384 257 CDD DPBB_EXPA_N 32 157 - -
Vifa4g00384 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Vifa4g00384 257 Pfam Lytic transglycolase 68 152 IPR009009 -
Vifa4g00384 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Vifa4g00384 257 SMART dpbb_1 68 152 IPR007112 -
Vifa4g00384 257 Gene3D - 21 158 IPR036908 -
Vifa4g00384 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vifa4g00384 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Vifa4g00384 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vifa4g00384 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vifa4g00384 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vifa4g00384 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Vifa4g00384 257 PANTHER EXPANSIN-A15 16 255 IPR002963 GO:0009664
Vifa4g00384 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Vifa4g00384 257 SUPERFAMILY Barwin-like endoglucanases 32 180 IPR036908 -
Vifa4g00384 257 Gene3D - 162 257 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00384 Vifa-Chr4 102627488 102628509 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00384 14 257 Expansin Gene Family AT3G15370 58.545 1.05e-113 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00384 - - gmx:106795376 461.07