Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00382 ATGGAATCTACATGCTTTGGTTCTGATGTGGAAGTCTCACTAAAGCAAAAATGTAAATCTACTACAGAAGAAGAGAGAACAACCTCTAGTGGTGAAAATGGTTGCTTTGATTGTAATATTTGCTTGGAATCAGCAAATGATCCCGTGGTTACACTTTGTGGTCATCTCTATTGCTGGCCATGCATATATAAATGGCTTAATGTCCAAAACTCTTCGGTTGAACCAGATAAGCAGCCTGCATGCCCTGTTTGTAAAGCTGTCATCTCCCATACTTCATTAGTCCCTCTTTACGGCCGCGGAAAATCAAATTCAGAAACCGATTCAAATAAACTCCAGGTGGGTTTGGTTATACCTCATCGACCACCTCCGTACAACTTGAATGCTATGTTAACATCTAATCGCCCGCCAAATTTGCATCATGGGGAGCAGCAACTCCATCCGAATTATTTCCAGACACAATCGCGGCCGATCCATTATCAGCATTACATTCCTCACCTTTATGAAGGTTATGGTGGCAATGCTTTACCTTATCATGGTGGTGCTGCTAGTGTTGTGAATCCTGTGATTGGTATGTTTGGGGATATGGTGTTGACAAGGGTTTTTGGTGTCTCTGATGCAAATTTGTTTACCTACTTTCACAATGGAAGTACCAGTCCTAGAATGAGGAGGCAGGAGATGCAGATAGACAAGTCTTTAAACAGAGTTTCTATCTTTCTTCTTTGTTGTTTCATTTTGTGTCTTCTCTTGTTTTGA 753 0.4117 MESTCFGSDVEVSLKQKCKSTTEEERTTSSGENGCFDCNICLESANDPVVTLCGHLYCWPCIYKWLNVQNSSVEPDKQPACPVCKAVISHTSLVPLYGRGKSNSETDSNKLQVGLVIPHRPPPYNLNAMLTSNRPPNLHHGEQQLHPNYFQTQSRPIHYQHYIPHLYEGYGGNALPYHGGAASVVNPVIGMFGDMVLTRVFGVSDANLFTYFHNGSTSPRMRRQEMQIDKSLNRVSIFLLCCFILCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00382 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 134 IPR013083 -
Vifa4g00382 250 SMART ring_2 38 84 IPR001841 -
Vifa4g00382 250 SUPERFAMILY RING/U-box 35 97 - -
Vifa4g00382 250 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Vifa4g00382 250 Pfam Zinc finger, C3HC4 type (RING finger) 38 84 IPR018957 GO:0046872
Vifa4g00382 250 ProSiteProfiles Zinc finger RING-type profile. 38 85 IPR001841 -
Vifa4g00382 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00382 Vifa-Chr4 102086344 102087096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00382 15 236 C3H Transcription Factor Family AT4G27470 46.903 9.00e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00382 K10666 - gmx:100817526 311.997