Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00375 ATGGCAACTGAAGAGCATAATGTCGCGAAGGCTGAAGAATTTAAAGTCCTTGCTAACCAAGCATTCAAAGATCGGAAATTTTCCCACTCTATTGATCTATATACACAAGCAATTGAGCTAAACAGTCAAAGTGCAGTTTACTATGCTAATCGTGCCTTTGCCCACCTCCGGCTTGAGGAATACGGTAGCGCGATATTAGATGCTACAAAGGATATTGAAGTTGATCCTAAATATTCAAAGGGATATTACAGGCGAGGTGCTGCTCATCTTGGGTTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAAAAATTGAAGGAATGTGAAAAATCAGTTATGAAACTGAAATTTGAAGAAGCTATTGCTGTACCAGGATCTGTGAAACACCAACAGCCGTCCTCAAACGCCGCCTCCATTGAAGGTCCTTCCGTCCAAACCGAAGCTTCGATCTCACGCATCATGGCCATCACCGATCTAATCGCAAAGCACTCTTTCGGTTCCATGTTCAACCTCCGCACTCAGTCGACCCTCTTCTTCCGTCGAACCACCACATAA 597 0.4338 MATEEHNVAKAEEFKVLANQAFKDRKFSHSIDLYTQAIELNSQSAVYYANRAFAHLRLEEYGSAILDATKDIEVDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKSVMKLKFEEAIAVPGSVKHQQPSSNAASIEGPSVQTEASISRIMAITDLIAKHSFGSMFNLRTQSTLFFRRTTT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00375 198 Gene3D Tetratricopeptide repeat domain 2 159 IPR011990 GO:0005515
Vifa4g00375 198 SUPERFAMILY TPR-like 6 137 IPR011990 GO:0005515
Vifa4g00375 198 SMART tpr_5 45 78 IPR019734 GO:0005515
Vifa4g00375 198 SMART tpr_5 11 44 IPR019734 GO:0005515
Vifa4g00375 198 SMART tpr_5 79 112 IPR019734 GO:0005515
Vifa4g00375 198 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Vifa4g00375 198 PANTHER RNA POLYMERASE II-ASSOCIATED PROTEIN 3 9 150 - -
Vifa4g00375 198 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Vifa4g00375 198 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00375 9 104 U-box Gene Family AT3G07370 32.292 7.48e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00375 K04460 - gmx:100820099 248.44