Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00367 ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAAGATACTAGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACATCGAAGTCTTGGGGTACATATTTCAAAGGTTCGCTCTGCTACTTTAGACACTTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCAAATTATGACAGAGTTGGTATTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTGGTGGAAGAGAAAAGTCATTCACAATGGCAAAAACCTGTTGAAAGAGTTGGGCATAATTATGTTGCAGAGAATACTTTTGAAGAAAGGAGGAAAATCCAACAATCAAATGCAAATACTGCTACTAGAATTAGTATTCTTGCTCCTCCCAAAGGACATGTTCAGGTAGCTCCTGTGGCTAAACATCAGCATATTGAGAAAGTGGAACCTCTGGTGCCACAAGTGCAAGCTGAAACATCACAGACAACTGGCACAGTTCATGATCCCCCTCCCAAAGTTGATTTTTCAACGGATCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCTGACGCAGCTGATGCTAATGCTGATGATGATAACAACTGGGCAGCTGCTACAGAGACGTCAACAGCTGAGAAAACTGAGACCAGGAAATCGGTTGAAAGTACACCCCAGCCCAGCTCTGGAATGGAGGATCTATTTAAAGACTCATCTTCAGTAACGCCAAGCTCTGCTCTTGAAAAACCACAAAAAGATATAAAAAATGATATTATGAGCCTCTTTGAAACGAAGCAGAACAATATAGTGTCTCCATTTGCTATGCATCAACATCAGTTGGCTATGCTGGCACAACAACAGTCTCTTATAATGGCGGCTGCTGCTGCTGCTAAATCTGTTAGTGGGGATGCCAAATATCCTGCTAATGTACAGCAACCTGGTCTTAGTATTCCTACCCAAAGTTGGCCAGCTGCAAGCTACCCAATTCCAGGAGTAATTCCCGTGGGTGGTCGAGGAGAACTGCAGAAACTTATGCAGACAATGAACATGACTTCCACGCATCCAGCAGAGAGCTCAGTTCAGTATCCACCGTCTAGTTTTTTTACGATGGCACAAGCTGCTTCAGTTAATGGTGCAGCAACGGCAGTAGTGAGTAAACCTCAGTCAGCAACTCCAGTATCATCAAACACTACACAGACGACAAATGATTATGATTTTTCCTCATTAACACAAGGAATGTTTGCAAAACCCTGA 1425 0.426 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLVEEKSHSQWQKPVERVGHNYVAENTFEERRKIQQSNANTATRISILAPPKGHVQVAPVAKHQHIEKVEPLVPQVQAETSQTTGTVHDPPPKVDFSTDLFDMLSMDDPNEKGSDAADANADDDNNWAAATETSTAEKTETRKSVESTPQPSSGMEDLFKDSSSVTPSSALEKPQKDIKNDIMSLFETKQNNIVSPFAMHQHQLAMLAQQQSLIMAAAAAAKSVSGDAKYPANVQQPGLSIPTQSWPAASYPIPGVIPVGGRGELQKLMQTMNMTSTHPAESSVQYPPSSFFTMAQAASVNGAATAVVSKPQSATPVSSNTTQTTNDYDFSSLTQGMFAKP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00367 474 CDD ArfGap 19 117 - -
Vifa4g00367 474 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vifa4g00367 474 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vifa4g00367 474 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vifa4g00367 474 MobiDBLite consensus disorder prediction 238 252 - -
Vifa4g00367 474 MobiDBLite consensus disorder prediction 210 309 - -
Vifa4g00367 474 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vifa4g00367 474 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vifa4g00367 474 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vifa4g00367 474 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vifa4g00367 474 MobiDBLite consensus disorder prediction 278 306 - -
Vifa4g00367 474 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vifa4g00367 474 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 473 IPR044520 GO:0005096
Vifa4g00367 474 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00367 Vifa-Chr4 97725629 97735520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00367 16 163 C2H2 Transcription Factor Family AT4G05330 40.881 5.34e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00367 K12486 - gmx:100807561 647.506