Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00358 ATGGGAGTTCCAGATAAAGATCCTCTTTCACAGTTGAGTTTACCTCCTGGTTTCAGATTCTTCCCTACCGATGAAGAGCTTCTTGTTCAGTACCTATGTCGCAAAGTTGCAGGACACCATTTTTCTTTGCCAATTATTGCTGAAATTGATTTATACAAATTCGATCCATGGGTTCTTCCAGGCAAAGCGAATTTCGGTGAGAAAGAGTGGTATTTCTTCAGTCCAAGGGACAGGAAATATCCAAACGGTTCACGACCAAACAGAGTTGCTGGGTCAGGCTACTGGAAAGCTACTGGAACGGACAAAATCATCACCACTGAAGGTAGAAAAGTTGGCATAAAGAAAGCACTTGTTTTCTATATTGGTAAAGCACCAAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGCCTTCTTGACGCTTCAAGAAAACACAACCTTGGTAGCTCCAAATTGGATGATTGGGTTTTATGTCGCATATACAAGAAGAACTCAAGCTCGCAGAAGGAAGTTCAATCGTTTTCGGGGAAAGAATACAGCAATGGTTCATCGCCTTCCACATCCTCCCATGTGGAGGATATGTCGGACTCGTTTCCGGTAATTGACGACCAGAGCTTTGCGCTTCCACGGGTGACATCACTCAAAATGCTACAGCAAGAAGACAAGTTCGGGTTTAATAACATGGGTGCCGGAATTTTCTCTGATTGGGTTACCCCGACGGAGTTTGACACGATACCCGAATTTGATTCCGGAAGCCAAACACAGGGGATGTTGAATTACAGCTGTAGTGACTTTTGTGTCCCTTCAGCGCCGCCGTTTGGGCAGATGGATTTCTCGGCGGGATTTAGGAACCCCACGGAAGAAGAGGTTCAGAGTGGCATGAGGACTCACCGGGTTACCGATAATGATAATTTCAATTTGTATCAGCATAATCCAAATGTGTTTTTGTCGGGCTTGGGCGACCCGTTTGGGTTTGGGTTTTCTGGTCATTAG 996 0.4478 MGVPDKDPLSQLSLPPGFRFFPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPGKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDASRKHNLGSSKLDDWVLCRIYKKNSSSQKEVQSFSGKEYSNGSSPSTSSHVEDMSDSFPVIDDQSFALPRVTSLKMLQQEDKFGFNNMGAGIFSDWVTPTEFDTIPEFDSGSQTQGMLNYSCSDFCVPSAPPFGQMDFSAGFRNPTEEEVQSGMRTHRVTDNDNFNLYQHNPNVFLSGLGDPFGFGFSGH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00358 331 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Vifa4g00358 331 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Vifa4g00358 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 195 - -
Vifa4g00358 331 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Vifa4g00358 331 MobiDBLite consensus disorder prediction 173 194 - -
Vifa4g00358 331 FunFam NAC domain-containing protein 72-like 23 169 - -
Vifa4g00358 331 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00358 Vifa-Chr4 93421253 93422491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00358 1 265 NAC Transcription Factor Family AT4G27410 63.287 1.16e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa4g00358 NAM 8.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00358 - - gmx:100811301 514.612