Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00355 ATGGTGTTATCAGCTTCGCCATCTTCTCTTACCAGAAGCTCCTTGGAAGAGATGTTAGATTCCCTTCGCCGCAAGGATCAAGACCAAGACAGCAACAAGGACTCGCCGCCGCCTGCTTTGCCATCCCGCCCGGCATCCAAGGCTCGCCTCCCGCCGGCCAGGCGCTCCTTGCCCAATAATTTTAAGGTCTGCAACGCTGGATTCAATGACAATGTGGAATGCAAGAGGAAGGAAACATCAACACCTACATCATACAAGACAAGAGAAACCAGTTTTGGGAGAAAGAGGGTCAAGATGGATATTGTGGAGTCACCTTATGTGCCTCCTATTTCTGAATTCCATACTCACGCTCTTTCTTATTTCATTCAAATCAAGCTTAGTGTTTGGTGTAGGCAACCAACAGGGCAATGGGACCTAGGGTCAATAAATTCAACTTCCGGAGAGGAAGTATCTGTTTCACTCTCAAATGGAAAAGTGCTCAATGTGCCTACATCAGAACTTGTACCAGCCAATCCCAATATTTTAGATGGCGTGGACAACCTTATTAAACTCGCTTATGTGAATGACCCATCGGTTCTTCACAATCTTAGGTTTAGATATTCTCAGGAGATGATTTATACTAAAGCAGGGCCCATTTTAATTGCACTCAATCCTTTCAAAGATCTCCACATTTATGGAAGTGATTATCTTTCCAATTATAGGCAACAACTTGTTCATAGTCCTCATGTCTATGGTATGGTAGATGCAGCTTATAACCAGATGATGAGAGATGAAATAGATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAGACAGCTAAAATTGCTATACAATACTTAGCTTCTCTTGGCGGTGGCAGTAGTGGGACAACAAATGATGTTCTTCAAACAAATTGTATACTAGAAACTTTTGGGAATGCAAAAACATCTGTGAATGACAACTCAACCAGATTTGGAAAGTTTATGGAAATTCATTTCAGTGCCACGGGTAAAATATGTGGGGCTAAAATTCAAACCTATTTGTTGGAAAAGTCAAGAATTGTTCAAGTGGCCAATGGTGAGAGGTCGTATCATGTACTTTATCAACTTTGTGCTGGATCATCATCTAGTCTTAAAGAGAGACTAAATCTTAGAGCAGCCCATGAATATAAATATTTAAATCAAAGTGACTGCATCACTATTGGTGGTATTGACGATGCTAAAAACTTTCATCAGCTGATGGAAGCATTTGATGCTGTTCGAATTTGTAAAGAGGACCAAGAGTTGATCTTTAAAGTGCTTGCTGCAATATTATGGCTGGGAAATATATCATTCAAAGTCACTGACAGTGAAAATCACATAGAGGTTGTGGGTGATGAAGCTGTAACCAGTGCTGCCCTGCTGATGGGTTGCACTTCCCAGGACTTAATGGCAGCATTATCTACCCATAAAATCCAATCTGACAAAGATACTGTTGCCAAAAGTTTGACATTATTGCAGGCCATTGAAACAAGAGATGCAATTGCCAAATTTATTTATTCCAGCTTGTTTGAATGGATTGTACAACAACTTAACAGGTCACTTGAAGTGAATGAAAAACATACAGAGAAATCCATTAGTATCCTTGATTTTTATGGGTTTCAGTCATTCCAGAAGAACAACTTTGAACAGTTTTGTATAAATTATGCCAATGAAAGGCTTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTGTGAATCAGATGGCATTGATTGTACAGTATTAGATTTTGGGGACAATCAAAAGTGCTTGGATCTATTTGAGAAGAAACCTCTCAGTCTACTCTCTTTATTGGATGATGAATCAAATTTTGCCGAGGCTTCTGATTTAACATTTGTCAACAGACTTAAGAACCTCCTGGAAGCTAATAATTGCTTCAAAGGGGAAAGAGGCAGGGCATTTAGTGTACGTCACTATGCAGGGGAGGTTTTGTATGATACAAATGGCTTTCTAGTAAAGAACAGAGATTCATTGTCTTATAATTCTATTCAACTCCTTTCATCATGTAATTGTGAACTGCTGAAGTTGTTCTCCAAAGGGATTAACCAACCCGAGGAGCACGGAAACTCCACTTTCCATATTGGTGCACTATACTCACAAAAGAGAGGTGTTGGAACAAAGTTCAAGGATCAATTGTTCAAGTTGATGCATCAATTGGAGAGCACCACTCCTCACTTTATTCGCTGCATAAAGCCAAATACTAACAACCTTCCTGGAATTTATGACAAGGAACTTGTCCTACAACAGCTCAGATGTTGTAGAGTTCTAGAAGCTGTTAAAATTTCAAAGGCTGGATTTCCTACTCGAGTGAACCATCAAGAATTTTCCAGAAGGTACGAGTTTCTGCTTTCTGAGACTGATATACCTCGGGATCCGTTGAGCGTCTCAGTTGCAGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTACCAAGTTGGCTACACAAAACTATATCTTCGAGCAGGGCAGATTGGTGCGCTGGAGGATAAGAGAAAACAGTTTTTGCGGGGAGTACTTGGGATTCAAAAATGCTTCCGTGCTCATCAAGCCCGCAGTTATTTCTGTAAACTTAGGAATGGAGTGACAACATTACAATCATTTACACGTGGAGACATTGCAAGAAGGAAACATGGTGTTTTGATGAAATCTTCCATAACAATTTATTCTAAAAAACTTGAGGAGATTCATGCAATCATAGTACTTCAATCTGTGATTCGTGGGTGGTTGGTTCGGAGGGATTCTAGTTACATCAATAAATTGAAGAAATATCATGAAAATGAAAAACCTAGACGGAACTTTTGTGTTAAGATGCCAGAAGTTGAGGATTTGTCCCAAGAGCTGCTTCAGAACATGCCTTCAGCTTTAGCAGAACTACAAACTCGCGTGTACAAGGCAGAAGAAATTGTGGAGCAAAAGGAAGAAGAAAATACTGAATTGAGGGAACAACTAAAATATTCTGAGAGAAAGAGGGTTGAATATGAGACAAAGATGAAGTCAATGGAGGAGATGTGGCAAAAGCAAATGGCATCCTTGCAATCGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTTCAGAGAATGGCACTGTTCAACCTGTAAGACATGATCTTGTGTCACCTCGCTACTATGATTCTGAAGATGCTTCTTCTATGGGATCTCGAACAACTAGTGGGAGCACACCTATGATGCTTTCTGGTAGTTTTTCCGTCCCTGATGCGGGGAAGCAAGCTAATGGTACTTTGACAACTGTAAGCAATCTGATGAAGGAATTTGAGCAGCGAAGACAAACCTTCAATGATGAAGTTAAAGCTTTGAATGAGATTAAACCAGGGCAGTCTGCCAACACGAGTTCCGCTGATGAACTTCGAAAACTGAAACAAAGATTTGAGGGATGGAAGAAACAATATAAGGTTAGATTACGGGAGACAAAAGCAAGGCTCTCTGAATCCGAAAAAAGTCGACGAACATGGTGGGGGAAATTAAGCTCAAGAGCATAA 3540 0.4028 MVLSASPSSLTRSSLEEMLDSLRRKDQDQDSNKDSPPPALPSRPASKARLPPARRSLPNNFKVCNAGFNDNVECKRKETSTPTSYKTRETSFGRKRVKMDIVESPYVPPISEFHTHALSYFIQIKLSVWCRQPTGQWDLGSINSTSGEEVSVSLSNGKVLNVPTSELVPANPNILDGVDNLIKLAYVNDPSVLHNLRFRYSQEMIYTKAGPILIALNPFKDLHIYGSDYLSNYRQQLVHSPHVYGMVDAAYNQMMRDEIDQSIIISGESGSGKTETAKIAIQYLASLGGGSSGTTNDVLQTNCILETFGNAKTSVNDNSTRFGKFMEIHFSATGKICGAKIQTYLLEKSRIVQVANGERSYHVLYQLCAGSSSSLKERLNLRAAHEYKYLNQSDCITIGGIDDAKNFHQLMEAFDAVRICKEDQELIFKVLAAILWLGNISFKVTDSENHIEVVGDEAVTSAALLMGCTSQDLMAALSTHKIQSDKDTVAKSLTLLQAIETRDAIAKFIYSSLFEWIVQQLNRSLEVNEKHTEKSISILDFYGFQSFQKNNFEQFCINYANERLQQHFNRHLFKLEQEDCESDGIDCTVLDFGDNQKCLDLFEKKPLSLLSLLDDESNFAEASDLTFVNRLKNLLEANNCFKGERGRAFSVRHYAGEVLYDTNGFLVKNRDSLSYNSIQLLSSCNCELLKLFSKGINQPEEHGNSTFHIGALYSQKRGVGTKFKDQLFKLMHQLESTTPHFIRCIKPNTNNLPGIYDKELVLQQLRCCRVLEAVKISKAGFPTRVNHQEFSRRYEFLLSETDIPRDPLSVSVAVLQKFNIPSEMYQVGYTKLYLRAGQIGALEDKRKQFLRGVLGIQKCFRAHQARSYFCKLRNGVTTLQSFTRGDIARRKHGVLMKSSITIYSKKLEEIHAIIVLQSVIRGWLVRRDSSYINKLKKYHENEKPRRNFCVKMPEVEDLSQELLQNMPSALAELQTRVYKAEEIVEQKEEENTELREQLKYSERKRVEYETKMKSMEEMWQKQMASLQSSLVAARKSLASENGTVQPVRHDLVSPRYYDSEDASSMGSRTTSGSTPMMLSGSFSVPDAGKQANGTLTTVSNLMKEFEQRRQTFNDEVKALNEIKPGQSANTSSADELRKLKQRFEGWKKQYKVRLRETKARLSESEKSRRTWWGKLSSRA 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00355 1179 CDD MYSc_Myo8 190 835 IPR036022 -
Vifa4g00355 1179 PANTHER MYOSIN 169 1167 - -
Vifa4g00355 1179 Gene3D - 359 418 - -
Vifa4g00355 1179 PRINTS Myosin heavy chain signature 260 285 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 PRINTS Myosin heavy chain signature 303 330 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 PRINTS Myosin heavy chain signature 206 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 PRINTS Myosin heavy chain signature 588 616 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 PRINTS Myosin heavy chain signature 535 563 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 ProSiteProfiles IQ motif profile. 872 901 IPR000048 GO:0005515
Vifa4g00355 1179 Gene3D - 545 737 - -
Vifa4g00355 1179 Coils Coil 1147 1167 - -
Vifa4g00355 1179 Coils Coil 1102 1122 - -
Vifa4g00355 1179 ProSiteProfiles IQ motif profile. 909 937 IPR000048 GO:0005515
Vifa4g00355 1179 Gene3D - 780 848 - -
Vifa4g00355 1179 MobiDBLite consensus disorder prediction 1 58 - -
Vifa4g00355 1179 MobiDBLite consensus disorder prediction 1159 1179 - -
Vifa4g00355 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 927 IPR027417 -
Vifa4g00355 1179 Gene3D Kinesin motor domain 179 776 IPR036961 -
Vifa4g00355 1179 ProSiteProfiles Myosin motor domain profile. 176 847 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 Coils Coil 970 1018 - -
Vifa4g00355 1179 Gene3D Myosin VI head, motor domain, U50 subdomain 420 715 - -
Vifa4g00355 1179 Gene3D - 853 899 - -
Vifa4g00355 1179 SMART iq_5 908 930 IPR000048 GO:0005515
Vifa4g00355 1179 SMART iq_5 871 893 IPR000048 GO:0005515
Vifa4g00355 1179 SMART iq_5 848 870 IPR000048 GO:0005515
Vifa4g00355 1179 Pfam IQ calmodulin-binding motif 853 869 IPR000048 GO:0005515
Vifa4g00355 1179 Pfam IQ calmodulin-binding motif 911 927 IPR000048 GO:0005515
Vifa4g00355 1179 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 123 172 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 MobiDBLite consensus disorder prediction 1 16 - -
Vifa4g00355 1179 MobiDBLite consensus disorder prediction 17 32 - -
Vifa4g00355 1179 SMART MYSc_2a 170 848 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 Pfam Myosin head (motor domain) 178 835 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00355 1179 ProSiteProfiles IQ motif profile. 851 878 IPR000048 GO:0005515
Vifa4g00355 1179 FunFam Myosin heavy chain 359 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00355 Vifa-Chr4 92210473 92235494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00355 1 1174 Myosins gene family AT5G54280 54.737 0.0 1332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00355 K10357 - gmx:100802074 1597.41