Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00354 ATGGTGTTATCAGCTTCGCCATCTTCTCTTACCAGAAGCTCCTTGGAAGAGATGTTAGATTCCCTTCGCCGCAAGGATCAAGACCAAGACAGCAACAAGGACTCGCCGCCGCCTGCTTTGCCATCCCGCCCGGCATCCAAGGCTCGCCTCCCGCCGGCCAGGCGCTCCTTGCCCAATAATTTTAAGGTCTGCAACGCTGGATTCAATGACAATGTGGAATGCAAGAGGAAGGAAACATCAACACCTACATCATACAAGACAAGAGAAACCAGTTTTGGGAGAAAGAGGGTCAAGATGGATATTGTGGAGTCACCTTATGTGCCTCCTATTTCTGAATTCCATACTCACGCTCTTTCTTATTTCATTCAAATCAAGCTTAGTGTTTGGTGTAGGCAACCAACAGGGCAATGGGACCTAGGGTCAATAAATTCAACTTCCGGAGAGGAAGTATCTGTTTCACTCTCAAATGGAAAATGCTTACTTCAGGTGCTCAATGTGCCTACATCAGAACTTGTACCAGCCAATCCCAATATTTTAGATGGCGTGGACAACCTTATTAAACTCGCTTATGTGAATGACCCATCGGTTCTTCACAATCTTAGGTTTAGATATTCTCAGGAGATGATTTATACTAAAGCAGGGCCCATTTTAATTGCACTCAATCCTTTCAAAGATCTCCACATTTATGGAAGTGATTATCTTTCCAATTATAGGCAACAACTTGTTCATAGTCCTCATGTCTATGGTATGGTAGATGCAGCTTATAACCAGATGATGAGAGATGAAATAGATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAGACAGCTAAAATTGCTATACAATACTTAGCTTCTCTTGGCGGTGGCAGTAGTGGGACAACAAATGATGTTCTTCAAACAAATTGTATACTAGAAACTTTTGGGAATGCAAAAACATCTGTGAATGACAACTCAACCAGATTTGGAAAGTTTATGGAAATTCATTTCAGTGCCACGGGTAAAATATGTGGGGCTAAAATTCAAACCTATTTGTTGGAAAAGTCAAGAATTGTTCAAGTGGCCAATGGTGAGAGGTCGTATCATGTACTTTATCAACTTTGTGCTGGATCATCATCTAGTCTTAAAGAGAGACTAAATCTTAGAGCAGCCCATGAATATAAATATTTAAATCAAAGTGACTGCATCACTATTGGTGGTATTGACGATGCTAAAAACTTTCATCAGCTGATGGAAGCATTTGATGCTGTTCGAATTTGTAAAGAGGACCAAGAGTTGATCTTTAAAGTGCTTGCTGCAATATTATGGCTGGGAAATATATCATTCAAAGTCACTGACAGTGAAAATCACATAGAGGTTGTGGGTGATGAAGCTGTAACCAGTGCTGCCCTGCTGATGGGTTGCACTTCCCAGGACTTAATGGCAGCATTATCTACCCATAAAATCCAATCTGACAAAGATACTGTTGCCAAAAGTTTGACATTATTGCAGGCCATTGAAACAAGAGATGCAATTGCCAAATTTATTTATTCCAGCTTGTTTGAATGGATTGTACAACAACTTAACAGGTCACTTGAAGTGAATGAAAAACATACAGAGAAATCCATTAGTATCCTTGATTTTTATGGGTTTCAGTCATTCCAGAAGAACAACTTTGAACAGTTTTGTATAAATTATGCCAATGAAAGGCTTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTGTGAATCAGATGGCATTGATTGTACAGTATTAGATTTTGGGGACAATCAAAAGTGCTTGGATCTATTTGAGAAGAAACCTCTCAGTCTACTCTCTTTATTGGATGATGAATCAAATTTTGCCGAGGCTTCTGATTTAACATTTGTCAACAGACTTAAGAACCTCCTGGAAGCTAATAATTGCTTCAAAGGGGAAAGAGGCAGGGCATTTAGTGTACGTCACTATGCAGGGGAGGTTTTGTATGATACAAATGGCTTTCTAGTAAAGAACAGAGATTCATTGTCTTATAATTCTATTCAACTCCTTTCATCATGTAATTGTGAACTGCTGAAGTTGTTCTCCAAAGGGATTAACCAACCCGAGGAGCACGGAAACTCCACTTTCCATATTGGTGCACTATACTCACAAAAGAGAGGTGTTGGAACAAAGTTCAAGGATCAATTGTTCAAGTTGATGCATCAATTGGAGAGCACCACTCCTCACTTTATTCGCTGCATAAAGCCAAATACTAACAACCTTCCTGGAATTTATGACAAGGAACTTGTCCTACAACAGCTCAGATGTTGTAGAGTTCTAGAAGCTGTTAAAATTTCAAAGGCTGGATTTCCTACTCGAGTGAACCATCAAGAATTTTCCAGAAGGTACGAGTTTCTGCTTTCTGAGACTGATATACCTCGGGATCCGTTGAGCGTCTCAGTTGCAGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTACCAAGTTGGCTACACAAAACTATATCTTCGAGCAGGGCAGATTGGTGCGCTGGAGGATAAGAGAAAACAGTTTTTGCGGGGAGTACTTGGGATTCAAAAATGCTTCCGTGCTCATCAAGCCCGCAGTTATTTCTGTAAACTTAGGAATGGAGTGACAACATTACAATCATTTACACGTGGAGACATTGCAAGAAGGAAACATGGTGTTTTGATGAAATCTTCCATAACAATTTATTCTAAAAAACTTGAGGAGATTCATGCAATCATAGTACTTCAATCTGTGATTCGTGGGTGGTTGGTTCGGAGGGATTCTAGTTACATCAATAAATTGAAGAAATATCATGAAAATGAAAAACCTAGACGGAACTTTTGTGTTAAGATGCCAGAAGTTGAGGATTTGTCCCAAGAGCTGCTTCAGAACATGCCTTCAGCTTTAGCAGAACTACAAACTCGCGTGTACAAGGCAGAAGAAATTGTGGAGCAAAAGGAAGAAGAAAATACTGAATTGAGGGAACAACTAAAATATTCTGAGAGAAAGAGGGTTGAATATGAGACAAAGATGAAGTCAATGGAGGAGATGTGGCAAAAGCAAATGGCATCCTTGCAATCGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTTCAGAGAATGGCACTGTTCAACCTGTAAGACATGATCTTGTGTCACCTCGCTACTATGATTCTGAAGATGCTTCTTCTATGGGATCTCGAACAACTAGTGGGAGCACACCTATGATGCTTTCTGGTAGTTTTTCCGTCCCTGATGCGGGGAAGCAAGCTAATGGTACTTTGACAACTGTAAGCAATCTGATGAAGGAATTTGAGCAGCGAAGACAAACCTTCAATGATGAAGTTAAAGCTTTGAATGAGATTAAACCAGGGCAGTCTGCCAACACGAGTTCCGCTGATGAACTTCGAAAACTGAAACAAAGATTTGAGGGATGGAAGAAACAATATAAGGTTAGATTACGGGAGACAAAAGCAAGGCTCTCTGAATCCGAAAAAAGTCGACGAACATGGTGGGGGAAATTAAGCTCAAGAGCATAA 3552 0.4029 MVLSASPSSLTRSSLEEMLDSLRRKDQDQDSNKDSPPPALPSRPASKARLPPARRSLPNNFKVCNAGFNDNVECKRKETSTPTSYKTRETSFGRKRVKMDIVESPYVPPISEFHTHALSYFIQIKLSVWCRQPTGQWDLGSINSTSGEEVSVSLSNGKCLLQVLNVPTSELVPANPNILDGVDNLIKLAYVNDPSVLHNLRFRYSQEMIYTKAGPILIALNPFKDLHIYGSDYLSNYRQQLVHSPHVYGMVDAAYNQMMRDEIDQSIIISGESGSGKTETAKIAIQYLASLGGGSSGTTNDVLQTNCILETFGNAKTSVNDNSTRFGKFMEIHFSATGKICGAKIQTYLLEKSRIVQVANGERSYHVLYQLCAGSSSSLKERLNLRAAHEYKYLNQSDCITIGGIDDAKNFHQLMEAFDAVRICKEDQELIFKVLAAILWLGNISFKVTDSENHIEVVGDEAVTSAALLMGCTSQDLMAALSTHKIQSDKDTVAKSLTLLQAIETRDAIAKFIYSSLFEWIVQQLNRSLEVNEKHTEKSISILDFYGFQSFQKNNFEQFCINYANERLQQHFNRHLFKLEQEDCESDGIDCTVLDFGDNQKCLDLFEKKPLSLLSLLDDESNFAEASDLTFVNRLKNLLEANNCFKGERGRAFSVRHYAGEVLYDTNGFLVKNRDSLSYNSIQLLSSCNCELLKLFSKGINQPEEHGNSTFHIGALYSQKRGVGTKFKDQLFKLMHQLESTTPHFIRCIKPNTNNLPGIYDKELVLQQLRCCRVLEAVKISKAGFPTRVNHQEFSRRYEFLLSETDIPRDPLSVSVAVLQKFNIPSEMYQVGYTKLYLRAGQIGALEDKRKQFLRGVLGIQKCFRAHQARSYFCKLRNGVTTLQSFTRGDIARRKHGVLMKSSITIYSKKLEEIHAIIVLQSVIRGWLVRRDSSYINKLKKYHENEKPRRNFCVKMPEVEDLSQELLQNMPSALAELQTRVYKAEEIVEQKEEENTELREQLKYSERKRVEYETKMKSMEEMWQKQMASLQSSLVAARKSLASENGTVQPVRHDLVSPRYYDSEDASSMGSRTTSGSTPMMLSGSFSVPDAGKQANGTLTTVSNLMKEFEQRRQTFNDEVKALNEIKPGQSANTSSADELRKLKQRFEGWKKQYKVRLRETKARLSESEKSRRTWWGKLSSRA 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00354 1183 Gene3D Kinesin motor domain 183 780 IPR036961 -
Vifa4g00354 1183 PRINTS Myosin heavy chain signature 539 567 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 PRINTS Myosin heavy chain signature 592 620 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 PRINTS Myosin heavy chain signature 210 229 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 PRINTS Myosin heavy chain signature 264 289 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 PRINTS Myosin heavy chain signature 307 334 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 SMART MYSc_2a 174 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 931 IPR027417 -
Vifa4g00354 1183 SMART iq_5 912 934 IPR000048 GO:0005515
Vifa4g00354 1183 SMART iq_5 875 897 IPR000048 GO:0005515
Vifa4g00354 1183 SMART iq_5 852 874 IPR000048 GO:0005515
Vifa4g00354 1183 MobiDBLite consensus disorder prediction 1 58 - -
Vifa4g00354 1183 Gene3D - 857 903 - -
Vifa4g00354 1183 ProSiteProfiles IQ motif profile. 855 882 IPR000048 GO:0005515
Vifa4g00354 1183 ProSiteProfiles IQ motif profile. 913 941 IPR000048 GO:0005515
Vifa4g00354 1183 FunFam Myosin heavy chain 363 419 - -
Vifa4g00354 1183 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 123 176 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 Gene3D Myosin VI head, motor domain, U50 subdomain 424 719 - -
Vifa4g00354 1183 CDD MYSc_Myo8 194 839 IPR036022 -
Vifa4g00354 1183 Gene3D - 549 741 - -
Vifa4g00354 1183 ProSiteProfiles Myosin motor domain profile. 180 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 Coils Coil 1151 1171 - -
Vifa4g00354 1183 Pfam IQ calmodulin-binding motif 915 931 IPR000048 GO:0005515
Vifa4g00354 1183 Pfam IQ calmodulin-binding motif 857 873 IPR000048 GO:0005515
Vifa4g00354 1183 Coils Coil 1106 1126 - -
Vifa4g00354 1183 ProSiteProfiles IQ motif profile. 876 905 IPR000048 GO:0005515
Vifa4g00354 1183 Gene3D - 363 422 - -
Vifa4g00354 1183 MobiDBLite consensus disorder prediction 1163 1183 - -
Vifa4g00354 1183 MobiDBLite consensus disorder prediction 1 16 - -
Vifa4g00354 1183 MobiDBLite consensus disorder prediction 17 32 - -
Vifa4g00354 1183 Pfam Myosin head (motor domain) 182 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa4g00354 1183 Coils Coil 974 1022 - -
Vifa4g00354 1183 Gene3D - 784 852 - -
Vifa4g00354 1183 PANTHER MYOSIN 173 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00354 Vifa-Chr4 92210473 92235494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00354 1 1178 Myosins gene family AT5G54280 54.560 0.0 1326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00354 K10357 - gmx:100802074 1591.63