Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00352 ATGGCTGGTGGCGTTTCGAGTCGAACTCGTAGCAAGAATGTTCGGTTGTTCAATACTATTTCCCTTGATGGATCATCTTCCTCTAAATTAAAGCGTAGTAGAAAGAATTATGAAGATGAAACAGGTTTTGACTCTGCTTCTTGTTCTAAAAAAACTAGGGTAAAACAAAAGCCTTTTGTCTTGTCTCAAAATATTAATGTTATTTGCATTGATGATGATGATGATGATGATGATGATGATAATGAGAAGATGTTGGAGGGTGACGACGATGTCAAAAGAAAAGTAGGGAGTGATGAAAGTGGAAGAGTTGATGGGTTTGATGCTAAAAAACAAGAAGAGAGTGTTGGAGGAAGTCATGATCACTTTGTTGATGAAAACTGTGATTGGACATCTGAAACCTCGATTACAAATTCGGATGATGAATCTGATTCTGAATCTGATGATGATGAAAGTGAGACTAGTGATGAAGAATTTCAAGTTAATGAGGTGAGTGAAGTTTCTGACAATGATAATATCAATTCTTCTTATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAGACGTGGAGGAGGAGGAGGAGGAGAAAAAAGAGAAGAAAAATGTTTGGAGTGTGGTGGAGGAGCTGGTGAGAGAGGTGAAAGATGAAAAAAGTGGAGTGAAAGATGGTAAAAGTGGAATTTCGGAGAGCAATAGTATTGAGGAGGTAGAGATTGAGAATAGTCCTTCTTCTGTACACAATGAAGAATCGGAGAATGCAGATTATGGTAGTGTAACAGCCTCTAGTGCCTTAGAGAAGAAGGGTTCTTTTGATCCAATGAAAGCTTCTTCTTCTTCAAACCTGAATGAAGCATTCTCAGAGACAAGAAAAGCAAAAAGTGTGGAAATTGTCTCTCTTTATGATGATGATGATGATGATGATGATGATGGTGATGATGATGATGAAAGTGTGAATGTTGGTGATTATGATGAAGGAAAAGAGCAATATGTCCGAGGTTTAGGCGTTGAAGGAGTTTCTTTGTTTCAAACGAAACGAGAAAAAATGGGGAATTCAGATAAACGCACAATCATGGAGGGCAAAAAAAGGGATCATGAAGGTAGAGCTAACATCTGTAATGGTGAGAAGAATGAATCCATGGAGAACAAAGAAAGGGATCATAGAGGTAGAGTTAACATCTGTAATGGTGAGAAAAAGGAATTCATGGAGAACAAAGGAAGGGGTCATGAAGGTAGAGTTAATATCTGTAATGGTGAGAAGAAGGAATCCGTGGAGAACAAAGAAAGGGATTGTGAAGATAGAGTTAACATCTGTAACGGTGAGAAGGAGGAATTTATGGATAACAATGGTTGGATGAATCAAAGAGATAAAAACACACTTTTTCTGCCAAAGGAGTTGCGTTTGACTAAACGCCTTGCTGAATTTTACTGGGGCAACAAGACTGCAGTGAAGAATGATTCTGTTGTGATGGAGGTGAAGGGTGACGTCGTTGATTGGCAGCCACCTCTGGTTTCGGTTGAGGCACATCCATTGATATGGAGCCTTAAGAAGGTGAAAAAATTGCAAAAGACCATAGAGGAGGAGGAGGAGCAAGTGTTATGGGATGAAATGAATGCATCCCTTAGAGAAGAGGAAGCTGAATCTATGATTGGAAATTTAGGGGCAAATGGAAAAATGGCAAGTCCATATTCTCTCTGTGAACATGACACTTTTCTTGACGAAGAGATTGGCGTATATTGCAAATTTTGTGGTTTTGTTGTCACTGATATCAAAGATGTCTCACCACCAGTGGTTGATAGATTTCCCAACGGTTCGGGAAAAAGAGCTTCGTCTGATAATTCAGTAAATGTCTCACCCTTTGATGGATCTCAGTTCAATGTTTCTGATGGTGGTGACTCAGAGACTAATCATTTCTCTAATGGTAAAGGCACAGTTTGGGACCTAATTTCTGATGTGAAACAAACTTTATATCCTCACCAACAAGAAGGATTTGAGTTCATTTGGAAAAACTTAGCAGGAAACATCAATCTTCGTGAGTTGAAGTACGCCGATCCTCACAGAGAGGGTGGCTGTATAATTTCACATGCTCCCGGAACCGGAAAGACAAGGTTGACCATAGTGTTTCTCATGGCTTATTTGAAAGTTTTCCCGGAGTGTCATCCGGTTATCGTTGCTCCTGCGAGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATTTTAACAATCTTGAATTCTCTGATAAAGAGTACAAAGATGCTTTTAATGCAGATAATTGGTATTATTTACCTCATAGTAAAGATACAACGCGAAAGGCGAAACTGATTTCGTGGTTCAAAGAAAAGAGCATTATGGGAATCAGTTACAATTTATATGAGAAGCTAGCCGGAGGAGGAGGAGAATCCGAAGATAAGAAAAAGAAAAAATATGCAAGTGTGGAGAAGACAAAAGAAAACAGTGATATTGGAAAGGTTCTACGCGAAATTCCTGGTTTGTTGGTGTTAGATGAAGGACACACGCCAAGAAATCAAAGAAGTCGTATTTGGAAGGTTTTGTCCAAGATTCAAACAAAGAAGCGAATTATACTTTCCGGAACTCCTTTCCAGAACAACTTCTATGAACTTTACAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAACACCATACCACGTGAGCTGAAGAAGTTTTGCCAGAAGCAGGAACCTAAAAAAACGTCAAAAGAATGGAGCTGGGAACCAATTCATGGCAACACAACAGAAAATCCTTCTGACAATAAGATCATGCAATTGAAGTTTTTAATGGATCCCTTTGTTCATGTTCACAAAGGCGCAATCCTTCAAAAGAAGCTTCCTGGACTAAGAGATTGTGTGCTAGCTTTGAAGCCGGACCGTTTGCAGAAACAAATTCTTGAGAGCATTCAAAGTTCTCAAAACACATTGATCTATGAGCATAAACTGACAATGGCATCAGTCCATCCATCTCTTTTGCTCGAATGTGGTCTTTTGGAAGAAGAGGAATCAGTTATCGACAAGAACCGGTTAGGAAAACTTAGATTGAACCCCTACGAAGGCGTGAAAACAAAGTTTTTGGTGGAGTTTGTTAGACTTTGTGATGCTGTTAATGAGAAAGTTCTTGTGTTCAGCCAATTCATCCGTCCTTTAAGCTTAATTAAAGACCAATTAAACATGGCTTTTAATTGGAGCGAGGGGAAGGAAATGCTGTACATGGACGGAAAGGTTGACCTAAAGGACAAACAATCCTTAATCCATAGCTTCAATGATGAAAATTGCCAAGCAAAGATTCTCCTTGCATCGACAAAAGCTTGCTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTGGTTCTACTTGATGTTGTATGGAATCCGTCGGTTGAAAGACAGGCTATAAGCAGAGCATATAGGATTGGACAGAAGAAGGTTGTATACACTTACCATCTGCTCACTCAAGGGACTACCGAGTACCTAAAATATTGCAAGCAGGCGGAAAAAGATCGGTTATCTGAACTTGTTTTTTCGACTAAAAATACCGATATCGATGAGTTAAAGAGCTGTGCAGTGGAGTTTGAAGATAGAGTTCTTGATCAAATGAAACAGCATGAAAAGCTCAAAGACATGTTTGGTGAGTGTGTGGTACAGCCCAAGGAGCGCGATTTGGTTCAGAGTTTCGGCCATTCATTATGA 3738 0.3941 MAGGVSSRTRSKNVRLFNTISLDGSSSSKLKRSRKNYEDETGFDSASCSKKTRVKQKPFVLSQNINVICIDDDDDDDDDDNEKMLEGDDDVKRKVGSDESGRVDGFDAKKQEESVGGSHDHFVDENCDWTSETSITNSDDESDSESDDDESETSDEEFQVNEVSEVSDNDNINSSYDDDDDDDDDDDDDEDVEEEEEEKKEKKNVWSVVEELVREVKDEKSGVKDGKSGISESNSIEEVEIENSPSSVHNEESENADYGSVTASSALEKKGSFDPMKASSSSNLNEAFSETRKAKSVEIVSLYDDDDDDDDDGDDDDESVNVGDYDEGKEQYVRGLGVEGVSLFQTKREKMGNSDKRTIMEGKKRDHEGRANICNGEKNESMENKERDHRGRVNICNGEKKEFMENKGRGHEGRVNICNGEKKESVENKERDCEDRVNICNGEKEEFMDNNGWMNQRDKNTLFLPKELRLTKRLAEFYWGNKTAVKNDSVVMEVKGDVVDWQPPLVSVEAHPLIWSLKKVKKLQKTIEEEEEQVLWDEMNASLREEEAESMIGNLGANGKMASPYSLCEHDTFLDEEIGVYCKFCGFVVTDIKDVSPPVVDRFPNGSGKRASSDNSVNVSPFDGSQFNVSDGGDSETNHFSNGKGTVWDLISDVKQTLYPHQQEGFEFIWKNLAGNINLRELKYADPHREGGCIISHAPGTGKTRLTIVFLMAYLKVFPECHPVIVAPASLLLTWEDEFKKWDIGVPFHNFNNLEFSDKEYKDAFNADNWYYLPHSKDTTRKAKLISWFKEKSIMGISYNLYEKLAGGGGESEDKKKKKYASVEKTKENSDIGKVLREIPGLLVLDEGHTPRNQRSRIWKVLSKIQTKKRIILSGTPFQNNFYELYNTLSLVKPSFPNTIPRELKKFCQKQEPKKTSKEWSWEPIHGNTTENPSDNKIMQLKFLMDPFVHVHKGAILQKKLPGLRDCVLALKPDRLQKQILESIQSSQNTLIYEHKLTMASVHPSLLLECGLLEEEESVIDKNRLGKLRLNPYEGVKTKFLVEFVRLCDAVNEKVLVFSQFIRPLSLIKDQLNMAFNWSEGKEMLYMDGKVDLKDKQSLIHSFNDENCQAKILLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLTQGTTEYLKYCKQAEKDRLSELVFSTKNTDIDELKSCAVEFEDRVLDQMKQHEKLKDMFGECVVQPKERDLVQSFGHSL 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 28 46 - -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 69 85 - -
Vifa4g00352 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 910 IPR027417 -
Vifa4g00352 1245 Pfam SNF2-related domain 671 992 IPR000330 GO:0005524|GO:0140658
Vifa4g00352 1245 Gene3D - 637 930 IPR038718 -
Vifa4g00352 1245 SMART helicmild6 1066 1155 IPR001650 -
Vifa4g00352 1245 CDD SF2_C_SNF 1037 1166 - -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 275 290 - -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 86 127 - -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 24 332 - -
Vifa4g00352 1245 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 218 1236 IPR044567 GO:0080188
Vifa4g00352 1245 SMART ultradead3 654 903 IPR014001 -
Vifa4g00352 1245 Gene3D - 962 1236 IPR027417 -
Vifa4g00352 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1198 IPR027417 -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 138 163 - -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 227 267 - -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 197 226 - -
Vifa4g00352 1245 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1043 1196 IPR001650 -
Vifa4g00352 1245 Pfam Helicase conserved C-terminal domain 1048 1155 IPR001650 -
Vifa4g00352 1245 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 684 895 IPR014001 -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 172 196 - -
Vifa4g00352 1245 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00352 Vifa-Chr4 90565092 90569267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00352 1053 1185 RAD5 or RAD16-like Gene Family AT5G43530 40.602 1.07e-17 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa4g00352 SNF2_N 2e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00352 K10875 - gmx:100806733 900.968