Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00348 ATGGAAAGAATGTTCCCATCAAAGAAGCCCTCAACTATGATGAATTCTCTTGATAGACCCATGTGTGTTCAAGGTGATTCTGGCCTTGTCCTCACCACTGATCCAAAACCACGGCTTCGTTGGACTGTCGAACTCCATGAACGCTTCATCGATGCTGTTGCTCAGCTTGGAGGACCAGATAAAGCCACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAACAATCGATTAAGGATGTTTCAGCTTTTGAACTGCAACGAAATACTGGCACCTCGTCTTCTATGACTGGCCGCAACATGAATGAGATGCAAATGGAGGTGCACAGAAGATTGCATGAACAATTAGAGGTTCAAAAACACCTTCAATTGAGGATTGAAGCTCAAGGAAAATACATGCAAAGTATATTAGAGAAAGCTTATCACACACTTGCAGGAGAAAACATGGCCGCTGCAGCTACAAATTTCAAGAGTATAAATGGAACTCAAAGCATCCCTGACATGAAAGATTTTGTTTCTCCTCTTAATAACTTTCCTCATTTGCAAGACCTTAACATTTGTGGTAGTGATGAGGAACAACTTGAGAGACCAACCCTTGAAGGATTTATGCCAACTAATGATAGTGAAAACATGTTTGTGGGGAAGAAAAGGACTAACCCTTTTGATGAAAATGGAAAGAGTCCATTAATTTGGAATAATAATGATCTTAGGCTTCATGATTTTGGAACAACTTCATCATGCATTAGTCCTCAAGATGTTCCTAATTTCAAAAGTGACTCATTGGATGGAAGTGATGAAAGTGATCCTATTGGTGAAGCTTATGACACAAAGGTGAGTGAGAAGAAGTTTGGTGCATCTATGAAGCTTGGAATAACAACACCTATGATCAATGCTGTGGCAACTGGTAGAAGCTTATCCCCATTTGGTTGA 1005 0.406 MERMFPSKKPSTMMNSLDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFIDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDVSAFELQRNTGTSSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYHTLAGENMAAAATNFKSINGTQSIPDMKDFVSPLNNFPHLQDLNICGSDEEQLERPTLEGFMPTNDSENMFVGKKRTNPFDENGKSPLIWNNNDLRLHDFGTTSSCISPQDVPNFKSDSLDGSDESDPIGEAYDTKVSEKKFGASMKLGITTPMINAVATGRSLSPFG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00348 334 MobiDBLite consensus disorder prediction 284 299 - -
Vifa4g00348 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 218 IPR044848 GO:0003700
Vifa4g00348 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Vifa4g00348 334 MobiDBLite consensus disorder prediction 274 299 - -
Vifa4g00348 334 Pfam MYB-CC type transfactor, LHEQLE motif 129 167 IPR025756 -
Vifa4g00348 334 Gene3D - 35 93 - -
Vifa4g00348 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Vifa4g00348 334 Pfam Myb-like DNA-binding domain 39 87 IPR001005 -
Vifa4g00348 334 FunFam Myb family transcription factor 35 93 - -
Vifa4g00348 334 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00348 Vifa-Chr4 89251622 89253546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00348 4 272 G2-like Transcription Factor Family AT1G79430 59.516 2.15e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa4g00348 Myb_DNA-binding 3.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00348 - - gmx:100796268 420.624