Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00347 ATGGAAAGAATGTTCCCATCAAAGAAGCCCTCAACTATGATGAATTCTCTTGATAGACCCATGTGTGTTCAAGGTGATTCTGGCCTTGTCCTCACCACTGATCCAAAACCACGGCTTCGTTGGACTGTCGAACTCCATGAACGCTTCATCGATGCTGTTGCTCAGCTTGGAGGACCAGATAAAGCCACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAACAATCGATTAAGGATGGTATGAGAGTTTCAGCTTTTGAACTGCAACGAAATACTGGCACCTCGTCTTCTATGACTGGCCGCAACATGAATGAGATGCAAATGGAGGTGCACAGAAGATTGCATGAACAATTAGAGGTTCAAAAACACCTTCAATTGAGGATTGAAGCTCAAGGAAAATACATGCAAAGTATATTAGAGAAAGCTTATCACACACTTGCAGGAGAAAACATGGCCGCTGCAGCTACAAATTTCAAGAGTATAAATGGAACTCAAAGCATCCCTGACATGAAAGATTTTGTTTCTCCTCTTAATAACTTTCCTCATTTGCAAGACCTTAACATTTGTGGTAGTGATGAGGAACAACTTGAGAGACCAACCCTTGAAGGATTTATGCCAACTAATGATAGTGAAAACATGTTTGTGGGGAAGAAAAGGACTAACCCTTTTGATGAAAATGGAAAGAGTCCATTAATTTGGAATAATAATGATCTTAGGCTTCATGATTTTGGAACAACTTCATCATGCATTAGTCCTCAAGATGTTCCTAATTTCAAAAGTGACTCATTGGATGGAAGTGATGAAAGTGATCCTATTGGTGAAGCTTATGACACAAAGGTGAGTGAGAAGAAGTTTGGTGCATCTATGAAGCTTGGAATAACAACACCTATGATCAATGCTGTGGCAACTGGTAGAAGCTTATCCCCATTTGGTTGA 1014 0.4063 MERMFPSKKPSTMMNSLDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFIDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDGMRVSAFELQRNTGTSSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYHTLAGENMAAAATNFKSINGTQSIPDMKDFVSPLNNFPHLQDLNICGSDEEQLERPTLEGFMPTNDSENMFVGKKRTNPFDENGKSPLIWNNNDLRLHDFGTTSSCISPQDVPNFKSDSLDGSDESDPIGEAYDTKVSEKKFGASMKLGITTPMINAVATGRSLSPFG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00347 337 Pfam Myb-like DNA-binding domain 39 87 IPR001005 -
Vifa4g00347 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 221 IPR044848 GO:0003700
Vifa4g00347 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Vifa4g00347 337 Gene3D - 35 93 - -
Vifa4g00347 337 Pfam MYB-CC type transfactor, LHEQLE motif 132 170 IPR025756 -
Vifa4g00347 337 MobiDBLite consensus disorder prediction 287 302 - -
Vifa4g00347 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Vifa4g00347 337 MobiDBLite consensus disorder prediction 277 302 - -
Vifa4g00347 337 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
Vifa4g00347 337 FunFam Myb family transcription factor 35 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00347 Vifa-Chr4 89251622 89253546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00347 4 275 G2-like Transcription Factor Family AT1G79430 60.208 7.48e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa4g00347 Myb_DNA-binding 3.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00347 - - gmx:100796268 432.18