Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00344 ATGTGTCTGAAGATATTGAAGCCACCTGAGCTAGATTGGCTTCTTTTTCATCTTTGTCAAATTCTCTTTCTTTGTCAAGTTCATCCATGTTGCCATGAGACTCTTCTTGACCTTGTTTCTGAAGTTGTTCTTCTGAAAGCTTCATTTCTTTGGCTAGTCCTTCTCCAACTTTGGACAATCAATAATAAAGTGACCAGGCTTCTTGCAGTTGAAGCATCCCTTCTGAGATTCCAAACGCTGAAATCTCTGTTTCAACCATTGTGTTACCATCATCAGACAAAAAAATATGGCATGATGGAACAATCAAGAAATGACCATGGATCTCAGTCAGTAATGCAGGACTATCTCGACACCATGTACCCTAATAGAACACAATCAGACGTTAAACCAGTACTCAATTATTCAATACAGACTGGCATCACTCATGCAGGGCTTGACAAAGCTTCAACACAGTTTAACAGCCAAACTGCATGGTTACATGGCTCAATTCCATCACCACCAAAAACTTCCTTCAATCAACAGACTGCTCAATTTGGGCAAGGCTATGCTTCTTACGCTGCTTCCGATACCTCATCAACCATGATCAAAAAGGACATATCTTGGCCGGACCTTTGGCGTAGAGCATTCTTAATCTACAATCTGGTTCATATACTCAAGTATCAACTTCCTGGGGAAGATCTCGATGCTTTGGTATCTGTATCATCTGATGAGGATTTACAGAATATGATGGAGGAGTATAACCATATAGAGGATACAGAACCCCCGCAAAAGCTTAGGATTTTTTTGTTCTCAATCACTGATTTACAAGATGCTCAGTTCGCTCTTAGTACCATTGGTGGTGATTCTCAGGTCCAGTATGTTGTTGCTGTTAATGGTATGGACTCGGGCTCAAGAACCACCTCAACCCCACTTGGTGTCAGCATTTCAAACAATGACATACATAAATTTAACACAAAAACTATCCAAACGGACACTAGTAATGTTGCTGTAGAATCTATACGTGTCACAGATGCTCCCTTGACTGGCAAATCTGACACTCCATTGGCTACCCATTGTCAATATCCTATTCACCACCGCGCTCTTCATCCCTCTCATAACCTTGTGGTTGGAGAGACCCCCATTTCTCTGGCTCCTCATCTTTTGAACAATCAATCAGGGATTCTGAATGAAGACCATCCACCTAGGGGAGTACAAGTACAAAAATCCGAACCATCTACCTTGCAGGTGAAAACAATAAGTGAAAATTCAAGCAAACAAGGGAGTGACCACGGCGACGTTCTATCCTTGGAAATCCCATCCCCGTCTCCGTTTCAGCCCATTGATGGTTACTTGAAAAACAATGGTCCTGAAGCATCAGCTGCGGTTACCATGCCTGAGGGGCATCTACCTTCGCTCCCTTGCACAAAAAAAGTTCAGCACCAGGATTGTAATGCTTCTTCTACATCTAGCAATTCATTTGCTCCTAATTATGTTGATTCCCACTCCAATGCAATTGATTTGAGTTCTCTTCACCCCCCTCCAATTCCTAAAAGATTTTACTGTTCAGAAAGAACTCCGAGGGAGCAAGTAGAGGTCCTGAATCGGTCCTCAAAGTCAGATGATGCACACAGCTCGCAGTTTAATGTGTCAGATTTGCTTTCTGATACCAAGGCAGAGGATCCAGTAACAGAATCTGGTGACAACTTACATGATGGTAATCTGTTAGATCCAGATGACAAATCAAGTATTTCAGCAAAGCCCTTTCCTGAAGATGACCATACCATTGACAATGGGTTTGCCAGCCATCAAATGAATAAACCGTTGCTTGATACAAACAGTGAGATAAAGTCTAACCTGTCTGAGCACATGGATCCTGAGTTGAAGCAAGTCTTGTTGAGTAATGAAGGAATTAAAGACGTGGAAACTAAAGATAATCATATCAAGCCCTTGTTTGATGAAACCGAAACTAAATATGGTAAATCAGATCTACCTGTTGTTCACCATGTTTCTTCTGTTGAGCGCCTTGATGTTATTGCATCCAATCTTCCAGAGATTGAATTGGGGTGA 2046 0.4179 MCLKILKPPELDWLLFHLCQILFLCQVHPCCHETLLDLVSEVVLLKASFLWLVLLQLWTINNKVTRLLAVEASLLRFQTLKSLFQPLCYHHQTKKYGMMEQSRNDHGSQSVMQDYLDTMYPNRTQSDVKPVLNYSIQTGITHAGLDKASTQFNSQTAWLHGSIPSPPKTSFNQQTAQFGQGYASYAASDTSSTMIKKDISWPDLWRRAFLIYNLVHILKYQLPGEDLDALVSVSSDEDLQNMMEEYNHIEDTEPPQKLRIFLFSITDLQDAQFALSTIGGDSQVQYVVAVNGMDSGSRTTSTPLGVSISNNDIHKFNTKTIQTDTSNVAVESIRVTDAPLTGKSDTPLATHCQYPIHHRALHPSHNLVVGETPISLAPHLLNNQSGILNEDHPPRGVQVQKSEPSTLQVKTISENSSKQGSDHGDVLSLEIPSPSPFQPIDGYLKNNGPEASAAVTMPEGHLPSLPCTKKVQHQDCNASSTSSNSFAPNYVDSHSNAIDLSSLHPPPIPKRFYCSERTPREQVEVLNRSSKSDDAHSSQFNVSDLLSDTKAEDPVTESGDNLHDGNLLDPDDKSSISAKPFPEDDHTIDNGFASHQMNKPLLDTNSEIKSNLSEHMDPELKQVLLSNEGIKDVETKDNHIKPLFDETETKYGKSDLPVVHHVSSVERLDVIASNLPEIELG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00344 681 MobiDBLite consensus disorder prediction 523 599 - -
Vifa4g00344 681 MobiDBLite consensus disorder prediction 532 546 - -
Vifa4g00344 681 PANTHER OS05G0427100 PROTEIN-RELATED 185 495 - -
Vifa4g00344 681 SUPERFAMILY CAD & PB1 domains 185 268 - -
Vifa4g00344 681 Pfam PB1 domain 193 263 IPR000270 GO:0005515
Vifa4g00344 681 SMART PB1_new 178 265 IPR000270 GO:0005515
Vifa4g00344 681 MobiDBLite consensus disorder prediction 386 432 - -
Vifa4g00344 681 MobiDBLite consensus disorder prediction 399 423 - -
Vifa4g00344 681 MobiDBLite consensus disorder prediction 550 590 - -
Vifa4g00344 681 Gene3D - 187 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00344 Vifa-Chr4 88222120 88229281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00344 480 564 MAP Kinase Kinase Kinase AT1G79570 49.412 1.14e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00344 - - psat:127075466 855.899