Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00337 ATGAAAAGCCTCGACGCGGTCCTCCTTACTTCACATTTCAATTTTGATACTGCAACGGTCTACTCTTTCTTTTTCTCCTTTCTTCTCCGCAAACTGCATCGTCCATCTCTTCCAAGCTTAAACCAAATCGAAGCCTCAATGGTTACCACCAAGGGAAAATCGCGAGTCGGTTCAACACGACCCTCTGTAGGTGGACAATCGCGTGCAACCGCAGGTGGTAAGAATTTCAAGGTTTTTTCCGATAATGATCGGATTAAAGTTGGTGATGGCTCCATAAACAGTGCTATAGCAGTTGACAAAGGCAAGGAGAAAAATATCGGAACATGTGACAATGACACTTCTTCAAATATAAACCCGAGAAAAGCATTGGCTGATGTTAGCAATGACCAAGGAAACTCTACAACAGCTGCTAAGCGTAGTAATATCTTCAAGGTTTCAGCAGGTTCAACCACTAAAAAAGTGGGTATCCCTTTGAGGAAATCCTTCACGGTTAAAGAGCAGAAAAATACTAGTCAAGGTGGAGTTCAATTAGATGCTCCCAATAGAGGCGTAGGTTTAAGGGTTCCTTTAGGTGGCCAGAAGAATAGTTCAAATGGAGGTCAGTCTGTTGCCTCAAAGGATAGGTTCGGGAGGAAGCTTCTATTACCTACAACTACAAGAACTTCAAGGAAGTCTCTGCCAGTTTTAGATACAACAGGCATAAGGATTTTTTTAGGTGATCGGAAGAATAGCTCAAATGGAGGTCAATCAGTTGCGACGACAAAAGATAGCACTTCAAGGAAGTCTCTGCCAGTTCCTAGGAGGGTAAACAGGGTAGATACGAATAACAAAAAGGAAAATGCTGGAAGTTCTGAAACATCCAATAGCCAAAATGGTCTACCAAGTAAGCTGACAACAGGCAGAAGGCTTAGTTCACAACTAATCAACGCAAGGAGTCATAGATGGAAGACTCGAGTTAGTGACAGCTTTGTTCGAACGGTTACAAGTAATGCTAACCAGGCATCCTCAAGCAATTCTACCAAGCCTATTGTTAAGACCACACTCAAATCTCAGAGGACTCTCAAATCTAAATCCATAGCAAATCAGAACTCAAAACCAACTACTGCCTTAACATCTAAGGGTAAGGAAAAGGTTTCTTCTTCACTTCCTAAGGATGAGGAAAAGGTTTCTTCTTCACTTCCTAAGGATGAGGAAAAGGTTTCTTCACTTCCTAAGGATGAGGAAAGTGTTTCTTTGTCTCTTCCTGAGAATAGTTCAGTGGTCATTTCCGATGGTGCAAATCAAAGACATCAACCATCTGATGGGGATAGTAGTCTAAAAACAGATTTGTCAGAGTTGATTCCAAGAAAAAGTTCCAGCCGTCGGAAATCTTATACGACTTCACTAATGGAAAAATCTAAGATTCTCAAGGAAAATAGTGAAGTCAAGAAGCAGGATAGCCTACCAAATATAGATGATGAATGTAACCATCTAGAAGTTTCTGAATATATTGATGATATATATCATTACTATTGGGTCACCGAGGCACATAGTCAAGCTCTGTCAAATTACATGTCAATTCAGACAGAGATTACTCCTCATATGCGGGGAGTATTGGTCAACTGGCTGATTGAGGTACACTTCAAATATGATTTGATGCCAGAAACACTATATCTGACAGTGACATTGTTGGATCAATATCTTTCTCAAGTGACTATAAAAAGGAGTGACATGCAGTTAGTTGGTCTTACTGCACTTTTGCTGGCTTCGAAATATGAAGACTTTTGGCATCCAAGGGTAAAGGATTTGATTAGTATCTCGGCTGAAACATATACTAGAGATCAAATGCTTGGAATGGAAAAGCTTATTCTTAGAAAACTGAAGTTCCGTCTTAATGCTCCCACTCCTTACGTTTTTATGGTTAGGTTTATCAAGGCTGCACAATCAAATATGAAGCTTGAACACATGGCCTTCTTTCTCATTGACCTGTGCTTAGTTGAATATGAAGCCTTAGCATTCAAACCATCATTACTATGTGCATCAGCTCTCTATCTTGCTCGTTGTACCCTGCAAATAACCCCATCATGGACACAACTCCTTCAAAAGCATGCGCGTTATGAAGTTTCACAGATCAGGGATTGTGCTGATATGATGCTGAAATTCCATAAAACTGCTGGGAAGGGAAAGTTAACAGTGGCTTATGAAAAATATTCCAGAAAGGAACTCAGTGCGGTAGCAGGAGTGAAACCGTTGGACAGACTTCCCCATTAA 2250 0.4067 MKSLDAVLLTSHFNFDTATVYSFFFSFLLRKLHRPSLPSLNQIEASMVTTKGKSRVGSTRPSVGGQSRATAGGKNFKVFSDNDRIKVGDGSINSAIAVDKGKEKNIGTCDNDTSSNINPRKALADVSNDQGNSTTAAKRSNIFKVSAGSTTKKVGIPLRKSFTVKEQKNTSQGGVQLDAPNRGVGLRVPLGGQKNSSNGGQSVASKDRFGRKLLLPTTTRTSRKSLPVLDTTGIRIFLGDRKNSSNGGQSVATTKDSTSRKSLPVPRRVNRVDTNNKKENAGSSETSNSQNGLPSKLTTGRRLSSQLINARSHRWKTRVSDSFVRTVTSNANQASSSNSTKPIVKTTLKSQRTLKSKSIANQNSKPTTALTSKGKEKVSSSLPKDEEKVSSSLPKDEEKVSSLPKDEESVSLSLPENSSVVISDGANQRHQPSDGDSSLKTDLSELIPRKSSSRRKSYTTSLMEKSKILKENSEVKKQDSLPNIDDECNHLEVSEYIDDIYHYYWVTEAHSQALSNYMSIQTEITPHMRGVLVNWLIEVHFKYDLMPETLYLTVTLLDQYLSQVTIKRSDMQLVGLTALLLASKYEDFWHPRVKDLISISAETYTRDQMLGMEKLILRKLKFRLNAPTPYVFMVRFIKAAQSNMKLEHMAFFLIDLCLVEYEALAFKPSLLCASALYLARCTLQITPSWTQLLQKHARYEVSQIRDCADMMLKFHKTAGKGKLTVAYEKYSRKELSAVAGVKPLDRLPH 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00337 749 CDD CYCLIN_AtCycB-like_rpt2 627 743 - -
Vifa4g00337 749 Gene3D - 620 747 - -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 238 264 - -
Vifa4g00337 749 PANTHER CYCLINS 454 731 IPR039361 -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 238 301 - -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 406 446 - -
Vifa4g00337 749 Pfam Cyclin, N-terminal domain 499 625 IPR006671 -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 276 301 - -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 51 71 - -
Vifa4g00337 749 SUPERFAMILY Cyclin-like 489 625 IPR036915 -
Vifa4g00337 749 SUPERFAMILY Cyclin-like 627 745 IPR036915 -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 351 377 - -
Vifa4g00337 749 CDD CYCLIN_CCNB1-like_rpt1 493 622 - -
Vifa4g00337 749 Gene3D - 513 619 - -
Vifa4g00337 749 FunFam putative cyclin-B3-1 isoform X3 623 748 - -
Vifa4g00337 749 SMART cyclin_7 631 713 IPR013763 -
Vifa4g00337 749 SMART cyclin_7 534 618 IPR013763 -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 378 405 - -
Vifa4g00337 749 FunFam Cyclin N-terminal domain containing 2 514 622 - -
Vifa4g00337 749 Pfam Cyclin, C-terminal domain 627 739 IPR004367 -
Vifa4g00337 749 SMART Cyclin_C_2 627 744 IPR004367 -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 351 462 - -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 51 69 - -
Vifa4g00337 749 MobiDBLite consensus disorder prediction 164 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00337 Vifa-Chr4 85450723 85458573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00337 259 748 Core Cell Cycle Gene Families AT1G16330 49.797 5.17e-156 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00337 K21777 - tpra:123899654 789.645