Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00336 ATGAAAAGCCTCGACGCGGTCCTCCTTACTTCACATTTCAATTTTGATACTGCAACGGTCTACTCTTTCTTTTTCTCCTTTCTTCTCCGCAAACTGCATCGTCCATCTCTTCCAAGCTTAAACCAAATCGAAGCCTCAATGGTTACCACCAAGGGAAAATCGCGAGTCGGTTCAACACGACCCTCTGTAGGTGGACAATCGCGTGCAACCGCAGGTGGTAAGAATTTCAAGGTTTTTTCCGATAATGATCGGATTAAAGTTGGTGATGGCTCCATAAACAGTGCTATAGCAGTTGACAAAGGCAAGGAGAAAAATATCGGAACATGTGACAATGACACTTCTTCAAATATAAACCCGAGAAAAGCATTGGCTGATGTTAGCAATGACCAAGGAAACTCTACAACAGCTGCTAAGCGTAGTAATATCTTCAAGGTTTCAGCAGGTTCAACCACTAAAAAAGTGGGTATCCCTTTGAGGAAATCCTTCACGGTTAAAGAGCAGAAAAATACTAGTCAAGGTGGAGTTCAATTAGATGCTCCCAATAGAGGTTTAAGGGTTCCTTTAGGTGGCCAGAAGAATAGTTCAAATGGAGGTCAGTCTGTTGCCTCAAAGGATAGGTTCGGGAGGAAGCTTCTATTACCTACAACTACAAGAACTTCAAGGAAGTCTCTGCCAGTTTTAGATACAACAGGCATAAGGATTTTTTTAGGTGATCGGAAGAATAGCTCAAATGGAGGTCAATCAGTTGCGACGACAAAAGATAGCACTTCAAGGAAGTCTCTGCCAGTTCCTAGGAGGGTAAACAGGGTAGATACGAATAACAAAAAGGAAAATGCTGGAAGTTCTGAAACATCCAATAGCCAAAATGGTCTACCAAGTAAGCTGACAACAGGCAGAAGGCTTAGTTCACAACTAATCAACGCAAGGAGTCATAGATGGAAGACTCGAGTTAGTGACAGCTTTGTTCGAACGGTTACAAGTAATGCTAACCAGGCATCCTCAAGCAATTCTACCAAGCCTATTGTTAAGACCACACTCAAATCTCAGAGGACTCTCAAATCTAAATCCATAGCAAATCAGAACTCAAAACCAACTACTGCCTTAACATCTAAGGGTAAGGAAAAGGTTTCTTCTTCACTTCCTAAGGATGAGGAAAAGGTTTCTTCTTCACTTCCTAAGGATGAGGAAAAGGTTTCTTCACTTCCTAAGGATGAGGAAAGTGTTTCTTTGTCTCTTCCTGAGAATAGTTCAGTGGTCATTTCCGATGGTGCAAATCAAAGACATCAACCATCTGATGGGGATAGTAGTCTAAAAACAGATTTGTCAGAGTTGATTCCAAGAAAAAGTTCCAGCCGTCGGAAATCTTATACGACTTCACTAATGGAAAAATCTAAGATTCTCAAGGAAAATAGTGAAGTCAAGAAGCAGGATAGCCTACCAAATATAGATGATGAATGTAACCATCTAGAAGTTTCTGAATATATTGATGATATATATCATTACTATTGGGTCACCGAGGCACATAGTCAAGCTCTGTCAAATTACATGTCAATTCAGACAGAGATTACTCCTCATATGCGGGGAGTATTGGTCAACTGGCTGATTGAGGTACACTTCAAATATGATTTGATGCCAGAAACACTATATCTGACAGTGACATTGTTGGATCAATATCTTTCTCAAGTGACTATAAAAAGGAGTGACATGCAGTTAGTTGGTCTTACTGCACTTTTGCTGGCTTCGAAATATGAAGACTTTTGGCATCCAAGGGTAAAGGATTTGATTAGTATCTCGGCTGAAACATATACTAGAGATCAAATGCTTGGAATGGAAAAGCTTATTCTTAGAAAACTGAAGTTCCGTCTTAATGCTCCCACTCCTTACGTTTTTATGGTTAGGTTTATCAAGGCTGCACAATCAAATATGAAGCTTGAACACATGGCCTTCTTTCTCATTGACCTGTGCTTAGTTGAATATGAAGCCTTAGCATTCAAACCATCATTACTATGTGCATCAGCTCTCTATCTTGCTCGTTGTACCCTGCAAATAACCCCATCATGGACACAACTCCTTCAAAAGCATGCGCGTTATGAAGTTTCACAGATCAGGGATTGTGCTGATATGATGCTGAAATTCCATAAAACTGCTGGGAAGGGAAAGTTAACAGTGGCTTATGAAAAATATTCCAGAAAGGAACTCAGTGCGGTAGCAGGAGTGAAACCGTTGGACAGACTTCCCCATTAA 2244 0.406 MKSLDAVLLTSHFNFDTATVYSFFFSFLLRKLHRPSLPSLNQIEASMVTTKGKSRVGSTRPSVGGQSRATAGGKNFKVFSDNDRIKVGDGSINSAIAVDKGKEKNIGTCDNDTSSNINPRKALADVSNDQGNSTTAAKRSNIFKVSAGSTTKKVGIPLRKSFTVKEQKNTSQGGVQLDAPNRGLRVPLGGQKNSSNGGQSVASKDRFGRKLLLPTTTRTSRKSLPVLDTTGIRIFLGDRKNSSNGGQSVATTKDSTSRKSLPVPRRVNRVDTNNKKENAGSSETSNSQNGLPSKLTTGRRLSSQLINARSHRWKTRVSDSFVRTVTSNANQASSSNSTKPIVKTTLKSQRTLKSKSIANQNSKPTTALTSKGKEKVSSSLPKDEEKVSSSLPKDEEKVSSLPKDEESVSLSLPENSSVVISDGANQRHQPSDGDSSLKTDLSELIPRKSSSRRKSYTTSLMEKSKILKENSEVKKQDSLPNIDDECNHLEVSEYIDDIYHYYWVTEAHSQALSNYMSIQTEITPHMRGVLVNWLIEVHFKYDLMPETLYLTVTLLDQYLSQVTIKRSDMQLVGLTALLLASKYEDFWHPRVKDLISISAETYTRDQMLGMEKLILRKLKFRLNAPTPYVFMVRFIKAAQSNMKLEHMAFFLIDLCLVEYEALAFKPSLLCASALYLARCTLQITPSWTQLLQKHARYEVSQIRDCADMMLKFHKTAGKGKLTVAYEKYSRKELSAVAGVKPLDRLPH 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00336 747 MobiDBLite consensus disorder prediction 51 71 - -
Vifa4g00336 747 Pfam Cyclin, C-terminal domain 625 737 IPR004367 -
Vifa4g00336 747 SMART Cyclin_C_2 625 742 IPR004367 -
Vifa4g00336 747 Gene3D - 618 745 - -
Vifa4g00336 747 CDD CYCLIN_AtCycB-like_rpt2 625 741 - -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 236 262 - -
Vifa4g00336 747 FunFam Cyclin N-terminal domain containing 2 512 620 - -
Vifa4g00336 747 PANTHER CYCLINS 452 729 IPR039361 -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 349 459 - -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 274 299 - -
Vifa4g00336 747 Pfam Cyclin, N-terminal domain 497 623 IPR006671 -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 349 375 - -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 51 69 - -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 163 177 - -
Vifa4g00336 747 CDD CYCLIN_CCNB1-like_rpt1 491 620 - -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 163 216 - -
Vifa4g00336 747 FunFam putative cyclin-B3-1 isoform X3 621 746 - -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 376 403 - -
Vifa4g00336 747 SUPERFAMILY Cyclin-like 487 623 IPR036915 -
Vifa4g00336 747 Gene3D - 511 617 - -
Vifa4g00336 747 SUPERFAMILY Cyclin-like 625 743 IPR036915 -
Vifa4g00336 747 SMART cyclin_7 629 711 IPR013763 -
Vifa4g00336 747 SMART cyclin_7 532 616 IPR013763 -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 236 299 - -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 188 202 - -
Vifa4g00336 747 MobiDBLite consensus disorder prediction 404 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00336 Vifa-Chr4 85450723 85458573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00336 257 746 Core Cell Cycle Gene Families AT1G16330 49.797 3.96e-156 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00336 K21777 - tpra:123899654 789.645