Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00327 ATGGGTCGCCCACCCAGTAACGGAGGCCCCGCCTTCCGCTTCACCCAGCCGGAGGTAACAGAAATGGAAGCTATTCTTTCAGAACACAACAATGCAATGCCAGCACGGGATGTTCTTCAAGCTCTTGCAGACAAGTTCAGCGAATCACCCGACCGTAAAGGCAAGATTACAGTACAGAATAAACAGGTATGGAATTGGTTTCAAAATAAGCGATATGCGATAAGGGCTAAAACTAGTAAGACTCCTGCGAAGTTAAATATCACGCCCATGCCTCGGGTTGATTTGGCCCCAGGAAGGATTATGGCTCAACCAACAGCTTCTCCTATTCCCGCTCCTTCATCTTCAGTTCAAGGAACAGCAAAATTAGCTCTTGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTAACTTTCTATCATACAGACATTTGGAGAGTAGTGATCCGGAAGTGCTTGTGCGTTTTTCCGGTTTTGGATCTGATGAAGATGAGTGGATTAATGTGAGAAAGAATGTCAGGCCACGCTCTCTGCCGTGTGAATCTTCAGAATGTGTCGCAGTGCTCGCTGGAGATCTCATACTTTGTTTTCAGGAAGGTAAAGAGCAAGCCCTTTACTATGATGCCCATGTCCTTGATGCTCAAAGACGGAGGCACGACGTGAGAGGTTGTCGTTGTAGATTTTTGGTTCGCTATGATCATGATCAGTCTGAGGAAATCGTGACGCTTAGGAAGGTTTGTCGGAGGCCTGAAACTGATTACAGATTACATCAACTTCATGCCGTGAATGATGCACCACCTGCGGATCATCAGAAGATTAGCTTGGATCATCCAGCAAATGTTCATAGCATGAGGGTTATTACTAATTCTTCTGAAATGGTGCAAAAGCAGCAACAGATTGCAAATACTCATATAGTAACACCAGTTTTGCAAACAAACGTTTCCATTCCAGCACAAACTATGAATGTGGATCCAGTGAAAATTGAAACAAAACCTGATATTCAAGCCGGAAACCCTGTCACTCTAGGCACTGCCACATTCACCCCCAGCATCATTACTACTGGAAGTATTACTACTAGCAGTGTTCCTGAAGTTTCGACTTCGAACCTGGCCGAAGAGAAGTAA 1149 0.4465 MGRPPSNGGPAFRFTQPEVTEMEAILSEHNNAMPARDVLQALADKFSESPDRKGKITVQNKQVWNWFQNKRYAIRAKTSKTPAKLNITPMPRVDLAPGRIMAQPTASPIPAPSSSVQGTAKLALENSVMEFEAKSGRDGAWYDVANFLSYRHLESSDPEVLVRFSGFGSDEDEWINVRKNVRPRSLPCESSECVAVLAGDLILCFQEGKEQALYYDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVTLRKVCRRPETDYRLHQLHAVNDAPPADHQKISLDHPANVHSMRVITNSSEMVQKQQQIANTHIVTPVLQTNVSIPAQTMNVDPVKIETKPDIQAGNPVTLGTATFTPSIITTGSITTSSVPEVSTSNLAEEK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00327 382 Gene3D - 10 86 - -
Vifa4g00327 382 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 320 IPR039276 -
Vifa4g00327 382 Gene3D - 188 260 - -
Vifa4g00327 382 Pfam SAWADEE domain 129 255 IPR032001 GO:0003682
Vifa4g00327 382 CDD homeodomain 13 75 IPR001356 GO:0003677
Vifa4g00327 382 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Vifa4g00327 382 SMART HOX_1 7 81 IPR001356 GO:0003677
Vifa4g00327 382 SUPERFAMILY Homeodomain-like 12 77 IPR009057 -
Vifa4g00327 382 Gene3D - 126 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00327 Vifa-Chr4 80219621 80228477 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa4g00327 SAWADEE 5.4e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00327 - - gmx:100783895 518.464