Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00307 ATGGAAGCTAGGAGTATTGAAAGGAAGAGAACAATGATGATGGAAAAGGTGAGAAGGAACAACACAGTGGAAGAAGAAGCGGAAAATGAAGTAGAAGAGGAGGATGGTGATGTTACTCTGACTGAAGAAGAGAAGAAGAAAGGGGTTGGTGGTGGGAGAAGAGGAGGTGGTGGAGGTGTTTCTCCACCTTCCTGCCAGGCAGAGAGGTGTGGAGCTGATTTGACAGATGCAAAGAGATACCATCGCCGCCATAAGGTGTGTGAATTTCATTCCAAGGCACCAGTTGTGATGGTTGCAGGGCAGAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGACTTGGTAGAGTTTGATGAATCCAAAAGAAGCTGCCGCAGACGATTGGCTGGACACAATGAGCGACGTCGGAAAACAAACCCGGAAGCTGCGAGTGAGGGCAGCAGCCACAGCAAAGGACAACATCAACCTAAGGAAACGCAGTGTAGGATTCAGATGAACTTACCAGGTAGTTCTGGCTACAAGTCATTCAATATCAGGTGA 543 0.4807 MEARSIERKRTMMMEKVRRNNTVEEEAENEVEEEDGDVTLTEEEKKKGVGGGRRGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVMVAGQRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNPEAASEGSSHSKGQHQPKETQCRIQMNLPGSSGYKSFNIR 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00307 180 Gene3D - 56 126 IPR036893 GO:0003677|GO:0005634
Vifa4g00307 180 Coils Coil 13 44 - -
Vifa4g00307 180 Pfam SBP domain 65 138 IPR004333 GO:0003677
Vifa4g00307 180 FunFam Squamosa promoter-binding-like protein 14 57 126 - -
Vifa4g00307 180 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 152 IPR044817 GO:0003677
Vifa4g00307 180 MobiDBLite consensus disorder prediction 158 180 - -
Vifa4g00307 180 MobiDBLite consensus disorder prediction 129 180 - -
Vifa4g00307 180 MobiDBLite consensus disorder prediction 1 66 - -
Vifa4g00307 180 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Vifa4g00307 180 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g00307 180 SUPERFAMILY SBT domain 63 143 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00307 Vifa-Chr4 70978351 70979281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00307 1 180 SBP-box Gene Family AT3G15270 47.826 5.15e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa4g00307 SBP 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00307 - - aprc:113864686 251.136