Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00306 ATGACCGGCGGCAAAGAAATCCTCCATATGATGAAGGAAAAAGTTTTGGGACCATCTGATCCAGACTCAGGGAAAGGAAAGAGCAAGATGTCAAAGCATGTAACTCATGGCTTTCACTTGGTAAAGGGAACATCAAATCATCCCATGGAAGACTACCTGGTTGCTGAATTCAAACATGTTGATGACAATGAGTTGGGTTTATTTGCAATATTCGACGGTCACGCAGGTCACACTGTGCCTGATTACTTGCGTTCTCATTTGTTTGATAATATTGTTAGTGCAAAGCCTCATTTTTTGACTGACCCCGCCGATAGTGTGAAGAGAGCATATAGCGTAACTGATTCAACTATTTTAGAGAAATCAGGTGAATTGGGCAAAGGAGGTTCCACAGCAGTTACAGCAATACTCATCAACTGTCAGAAGCTAGTAGTGGCTAACATTGGTGATTCTCGGGCTGTCTTATCCGAGAATGGACTTGCTATACCACTCTCAGTGGATCATGAACCGACAACAGAAAGCGATGATATCAAAAATAGAGGTGGTTTTGTATCTAACTTCCCAGGGGATGTTGCACGCGTTGATGGGCAGTTAGCAGTGTCAAGAGCATTTGGCGACAAAAGTCTTAAGATACACATGACCTCTGAGCCACATGTGACGGTGAAGATGATAGATGATGGTGGAGAGTTTGTTATATTAGCCAGTGATGGGTTATGGAAGGTCATGTCAAATCAAGAAGCAGTTGATGCTATCAAAGATATCAAGGATGCTCGGGCTGCAGCAAAGCACCTTACTGAAGAAGCCCTTAACAGGAGAAGCTCAGATGATATCTCTTGCATTGTTGTGAGGTTTCACTGA 855 0.4316 MTGGKEILHMMKEKVLGPSDPDSGKGKSKMSKHVTHGFHLVKGTSNHPMEDYLVAEFKHVDDNELGLFAIFDGHAGHTVPDYLRSHLFDNIVSAKPHFLTDPADSVKRAYSVTDSTILEKSGELGKGGSTAVTAILINCQKLVVANIGDSRAVLSENGLAIPLSVDHEPTTESDDIKNRGGFVSNFPGDVARVDGQLAVSRAFGDKSLKIHMTSEPHVTVKMIDDGGEFVILASDGLWKVMSNQEAVDAIKDIKDARAAAKHLTEEALNRRSSDDISCIVVRFH 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00306 284 MobiDBLite consensus disorder prediction 11 31 - -
Vifa4g00306 284 SMART PP2C_4 31 281 IPR001932 -
Vifa4g00306 284 Pfam Protein phosphatase 2C 46 276 IPR001932 -
Vifa4g00306 284 FunFam Probable protein phosphatase 2C 39 25 284 - -
Vifa4g00306 284 Coils Coil 246 266 - -
Vifa4g00306 284 ProSitePatterns PPM-type phosphatase domain signature. 67 75 IPR000222 GO:0043169
Vifa4g00306 284 PANTHER PROTEIN PHOSPHATASE 30 283 IPR015655 GO:0004722|GO:0006470
Vifa4g00306 284 ProSiteProfiles PPM-type phosphatase domain profile. 35 283 IPR001932 -
Vifa4g00306 284 CDD PP2Cc 42 283 IPR001932 -
Vifa4g00306 284 SUPERFAMILY PP2C-like 31 284 IPR036457 -
Vifa4g00306 284 Gene3D - 38 284 IPR036457 -
Vifa4g00306 284 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00306 Vifa-Chr4 70971221 70977243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00306 4 284 PP2C-type Phosphatase Gene Family AT3G15260 71.528 1.91e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00306 K17506 - gmx:100787942 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00306 4 70971221 70977243 Vifa4g00306 4 70971221 70977243 ECH
Vifa4g00306 4 70971221 70977243 Vifa1g08728 1 1378214577 1378216688 PCT