Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00300 ATGACTTGTTGTTCTCATCTTTTCAGACAAATAAGGTCTTCCTCAGCCACGCGATTCACGCGAACCGATATAGATATTTCAGAACTTCACAATGTCAAAATTTACACTTACAAGGAACTGAGAATCGCCACTACAGGGTTTAGTCTTGCAAACAAGATAGGGCAGGGAGGTTTTGGATCTGTCTATAAGGGAAAGTTGAGGGATGGTTGTCTAGTAGCTATAAAGGTTTTATCAGCTGAATCAAAACAAGGGGTTCAAGAGTTCTTGACAGAAATCAAGGTGATTTCTAGTATAGAACATGAAAATCTAGTGAAGTTGTATGGATGCTGTGTGGAAGATAATCATAGGATTTTGGTATATGGCTATCTTCAGAACAACAGCCTAGCACAAACACTTCTTGGTCATAGTAACATCAAATTCAGTTGGGATGTAAGGCGCAACATTTGCGTAGGTGTTGCTCGAGGGCTTGCATTCCTTCATGGAGAGGTTCGGCCACATATCATTCATAGAGATATAAAAGCCAGCAATGTATTACTTGACACAGATCTCCGACCCAAAATTTCTGATTTTGGCCTTGCAAAGCTTATTTCTCCAAACCTGACCCATATTAGTACAAGGGTTGCTGGAACCGCTGGTTATGTGGCTCCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCGGACATCTATAGTTTTGGAGTGTTACTGTTAGAAATTGTTAGTGGGAGGCCCAACACAAACAGACGTTTACCTGTTAAAGAACAATATCTTCTTACAAGGGCATGGGATTTGTATGAGAAAGGGGAGCTAAAAACTTTGGTTGATGCTTTTCTAGAAGGGGACTTCAGTGTTGAGGAGGCAGTCAAATTTTGCAAGATTGGTCTTCTTTGCACACAGGATTCTCCTCAGCTCCGGCCTTCTATGTCCACTGTCCTTAAAATGCTTATTGGTGAAAAATATGTGAATGATGATAATATAATAAAACCAGGCATAATATTTGAATTTGTAGATGCCAATGACCAAGAGGATAGAAGATGCAAGGCTGGAGTGAAAAGTGCATATACTTCTTTGTTGGCTAGTTCAGGAATGCAAGATGATTCATCTTCATCAGGAACCTCTTTTGCTGCCATGTCTTTCACTGCTATTTGTGATCGAACCAATTAA 1167 0.3993 MTCCSHLFRQIRSSSATRFTRTDIDISELHNVKIYTYKELRIATTGFSLANKIGQGGFGSVYKGKLRDGCLVAIKVLSAESKQGVQEFLTEIKVISSIEHENLVKLYGCCVEDNHRILVYGYLQNNSLAQTLLGHSNIKFSWDVRRNICVGVARGLAFLHGEVRPHIIHRDIKASNVLLDTDLRPKISDFGLAKLISPNLTHISTRVAGTAGYVAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVKEQYLLTRAWDLYEKGELKTLVDAFLEGDFSVEEAVKFCKIGLLCTQDSPQLRPSMSTVLKMLIGEKYVNDDNIIKPGIIFEFVDANDQEDRRCKAGVKSAYTSLLASSGMQDDSSSSGTSFAAMSFTAICDRTN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00300 388 FunFam cold-responsive protein kinase 1 18 122 - -
Vifa4g00300 388 Pfam Protein kinase domain 49 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00300 388 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00300 388 CDD STKc_IRAK 53 316 - -
Vifa4g00300 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vifa4g00300 388 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vifa4g00300 388 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 346 - -
Vifa4g00300 388 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Vifa4g00300 388 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Vifa4g00300 388 ProSiteProfiles Protein kinase domain profile. 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00300 388 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 328 - -
Vifa4g00300 388 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00300 Vifa-Chr4 66979168 66981019 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00300 35 333 Receptor kinase-like Gene Family AT1G56120 54.849 4.56e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00300 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00300 - - gmx:100801735 587.8