Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00295 ATGAGACTCTATTATTTGGGTTCTGAACTTGTTATTATTACTACTCTTTGTTTCTTCAGCTGTTTGTTTAAGTTTTCACAAGCTCAAACTGCAAAAGCCACTACAGATCCTTCTGAAGCAAGAGCTCTAAATTCAATATTTAGCAAATGGAAAATAAAAGCAGACAATACTCAATGGAACATAAGCGGTGAGCTATGCAGTGGAAAAGCAATTGTTAGCAGTATCAGTATTGAGGACCAAACTTATGACCCTTTCATCAAATGTGACTGTTCCTATAACAACCAAACTACTTGCCACATCACTGCATTGAAAGTTTATTCATTGGATGTGATCGGTGAAATTCCACCAGAGCTATGGACTCTCACATACCTCACCAATTTGAAAATCAGCCAGAATTACTTGACCGGTACTCTACCTCCGGCAATTGGAAATCTGACTCGTATGCAATACATGTCTATTGGCATCAATTCTTTGTCAGGACAGCTTCCAAAGGAATTGGGAGATCTTACTGAGTTGATTGTATTGGGTTTTGGGTCTAATAACTTTTCAGGATCCTTGCCATCTGAACTTGGGAATCTGGTAAAACTACGAGAACTCTACTTGGATAGTTCTGGAATAAGTGGTCCAATTCCACAAACATTTGCAAGCCTTACGAGTTTGACGACATTATGGGCTTCAGACACAGAACTCACAGGGAAAATACCCGACTTCATAGGAAATTTATCTAAGCTTCAATCCTTGAGATTTCAGGGTAATTCCCTTCAAGGTCCAATACCCTTGTCATTTTCCAATTTGACTTCTGTGATGGAATTGAGAATAAGCGGTCTATCAAATGGGAGCTCCTCATTGGATGCAATAAAGAACATGAAGTCTATCACAATCTTAGAATTGAGGGATAACAATATTTCTGGTTCAATTCCTTCTTTCATTGGAGAATACCAAAATTTGACTCAGCTGGACTTAAGCTTCAATAACCTCTCAGGACAAATTCCCGGATCAATTTTCAATTTGAGCTCGCTCTCTTCCTTGTTACTCGGAAATAACACACTTAATGGCAGTCTCCCTCGGCAGAAAAGTTCATCTCTTAACAACATAGACTTGTCATACAATGATCTATCAGGAAGCTTCCCGTCTTGGATAAACGGACAAAATCTAGAACTGAACTTAGTAGCCAACAACTTGACAATAGATGATTCAAATAGCAGTGGTTTGCCCACTGGGCTAAACTGTCTCCAGAAAACTTTTGCATGCAATCGTGGTGCTGCTGCAAGATATTCTGACTTCGCAATCAAGTGTGGTGGTCCTCAAATTAGAAGTACAGATGGAATTGTGTATCAAACGGACAATGAGACACTCGGTCCTGCTACATACTTTGTTACTGATACTGAAAGATGGGCTGTTAGTAATGCTGGAATATTTACTGGGAACAACAATCCTGGGTTCAAAAGTTTTGTGACTAATCAGTTCACTGGTACTGTGAACCCGGAGATTTTTCAAACTGCTCGGCTCTCTGCGTCGTCATTAAGATATTACGGTTTGGGGCTAGAAAATGGTTTTTATAACATTACCCTCCAGTTTGCTGAAACAGCTATTCTCGATTCCACCACATGGAAAAGCCTCGGGAAACGAGTATTTGATATTTATATCCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAAACAAGCCGGAGGTGTCTCTTATAGAGCTGTTAAAAAACAATTTAGGTTTGAAGTGAAAGAAAACTATGTCGAGATCCATCTTTTTTGGGCTGGAAAAGGGACTTGTTGCATACCTGGCCAAGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTACACCAGATTTCATACCTACTGTCAGCAACAAACCTCCCAGCAGTAAAAAGAATAGAGCAGGTCTAATCGTTGGAGTTGTTGTTGGTGTTGTAGTTGTATGCCTTCTATCAATTTTCGCCATATGCCTTCTATCAATTTTCGCCATTTTCTATATCATTCGGAGAAGAAAACACTATGATGATGATGATGAGCTTTTAGGCATTGATACAATGCCAAACACTTTCAGCTACTATGAGTTAAAAAATGCTACGAGTGACTTCAACCGTGACAATAAACTTGGAGAAGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGATGTGGCTGTCAAACAATTATCGATAGGATCCCATCAAGGAAAGAGTCAGTTTGTAGCTGAGATTGCTACTATATCTGCCGTGCAACACCGTAATCTTGTCAAATTATATGGATGTTGTATTGAAGGGAGTAAAAGACTTCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGTTTTATTCCTCAATTGGCCGACCCGCTATGATATTTGTATGGGTGTTGCAAGAGGTTTGACATATTTACACGAGGAGTCACGGCTTCGTATTGTGCATCGCGATGTGAAGGCTAGTAATATTCTACTCGATTCTGAACTCATCCCAAAAATATCTGACTTTGGGTTGGCAAAATTATACGATGATAAGAAAACTCATATAAGCACCCGCGTTGCAGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCCGATGTTTTTTCCTTTGGTGTTGTGGCGCTCGAGTTAGTCAGTGGGAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAGAAGATGTATCTTTTAGAATGGGCTTGGCAGCTTCATGAAAGGGGCTGTACAAGCAATCTGATCGATCCTAGACTATCAGAATTCAACAAGGAAGAAGTCCAACGCCTTGTGGGAATAGCACTTTTGTGCACACAAACATCACCAACTTTACGGCCACCCATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAGGTGAGCGCTGTAACATCAAGGCCCGGATACCTCACTGACTGGAAATTTGACGATGTGAGCAGCATCATGACCGACCTTTCATTGAAAGGATTAGATACAAGTAATTACACTTCAACAGCAAATACAAGCATTGCTGTTGGAGCAGATCAATCTTCACCAAATGATTCTTCTAAACCCATCCTTCGTGAGACTCTTAGAGAGGGTAGGTAA 3129 0.4049 MRLYYLGSELVIITTLCFFSCLFKFSQAQTAKATTDPSEARALNSIFSKWKIKADNTQWNISGELCSGKAIVSSISIEDQTYDPFIKCDCSYNNQTTCHITALKVYSLDVIGEIPPELWTLTYLTNLKISQNYLTGTLPPAIGNLTRMQYMSIGINSLSGQLPKELGDLTELIVLGFGSNNFSGSLPSELGNLVKLRELYLDSSGISGPIPQTFASLTSLTTLWASDTELTGKIPDFIGNLSKLQSLRFQGNSLQGPIPLSFSNLTSVMELRISGLSNGSSSLDAIKNMKSITILELRDNNISGSIPSFIGEYQNLTQLDLSFNNLSGQIPGSIFNLSSLSSLLLGNNTLNGSLPRQKSSSLNNIDLSYNDLSGSFPSWINGQNLELNLVANNLTIDDSNSSGLPTGLNCLQKTFACNRGAAARYSDFAIKCGGPQIRSTDGIVYQTDNETLGPATYFVTDTERWAVSNAGIFTGNNNPGFKSFVTNQFTGTVNPEIFQTARLSASSLRYYGLGLENGFYNITLQFAETAILDSTTWKSLGKRVFDIYIQGTRVLKDFDIQKQAGGVSYRAVKKQFRFEVKENYVEIHLFWAGKGTCCIPGQGTYGPLIQAISATPDFIPTVSNKPPSSKKNRAGLIVGVVVGVVVVCLLSIFAICLLSIFAIFYIIRRRKHYDDDDELLGIDTMPNTFSYYELKNATSDFNRDNKLGEGGFGPVYKGTLNDGRDVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNVLFLNWPTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHERGCTSNLIDPRLSEFNKEEVQRLVGIALLCTQTSPTLRPPMSRVVAMLSGDIEVSAVTSRPGYLTDWKFDDVSSIMTDLSLKGLDTSNYTSTANTSIAVGADQSSPNDSSKPILRETLREGR 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00295 1042 SMART serkin_6 701 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00295 1042 FunFam Leucine-rich repeat receptor-like protein kinase 425 616 - -
Vifa4g00295 1042 Gene3D Transferase(Phosphotransferase) domain 1 777 979 - -
Vifa4g00295 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Vifa4g00295 1042 FunFam Putative LRR receptor-like serine/threonine-protein kinase 777 980 - -
Vifa4g00295 1042 FunFam Putative LRR receptor-like serine/threonine-protein kinase 279 402 - -
Vifa4g00295 1042 FunFam Leucine-rich repeat receptor-like protein kinase 670 776 - -
Vifa4g00295 1042 ProSiteProfiles Leucine-rich repeat profile. 315 337 IPR001611 GO:0005515
Vifa4g00295 1042 Pfam Malectin domain 427 612 IPR021720 -
Vifa4g00295 1042 Gene3D Ribonuclease Inhibitor 36 279 IPR032675 -
Vifa4g00295 1042 Gene3D - 427 616 - -
Vifa4g00295 1042 SUPERFAMILY Protein kinase-like (PK-like) 684 985 IPR011009 -
Vifa4g00295 1042 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 994 - -
Vifa4g00295 1042 Gene3D Phosphorylase Kinase; domain 1 673 776 - -
Vifa4g00295 1042 Pfam Protein tyrosine and serine/threonine kinase 704 967 IPR001245 GO:0004672|GO:0006468
Vifa4g00295 1042 FunFam Os05g0263100 protein 40 278 - -
Vifa4g00295 1042 ProSiteProfiles Protein kinase domain profile. 701 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00295 1042 CDD STKc_IRAK 707 968 - -
Vifa4g00295 1042 SUPERFAMILY L domain-like 90 394 - -
Vifa4g00295 1042 Gene3D Ribonuclease Inhibitor 280 413 IPR032675 -
Vifa4g00295 1042 MobiDBLite consensus disorder prediction 1019 1042 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00295 Vifa-Chr4 64904688 64918071 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00295 105 259 Receptor kinase-like Gene Family AT1G56120 29.032 6.70e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00295 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00295 - - mtr:25502389 1633.62