Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00290 ATGACTTGTTTTTCTTTCTTATTTGGTAAGAATGTGTCTTCTGATATAAGACGAGATCCTGAAATTGATCAAGGACTTTCCGGTATTCGAATTAAAGTTTATACCTACAAAGAACTCAAAAATGCCTCCGACAATTTCAGCCTGGCTAATAAAATCGGGGAGGGTGGTTTTGGTTCTGTCTATAAGGGAGTACTAAAAGGTGGGAAGTTAGCTGCTATAAAAGTTCTCTCAACTGAATCAAAACAAGGGGTGAAGGAATTCTTGACCGAGATTAATGTCATTTCAGAAATCCAGCATGAAAATTTAGTTATACTATATGGTTGTTGCGTGGAAGGAGATCACCGAATATTAGTCTACAATTACCTCGAGAACAATAGTCTTGCACAAACCCTTCTGGCTGGAGGTCACAGTAATATCTACTTCGATTGGCAAACACGATGTAAGATATGTATTGGAGTTGCACGCGGACTTGCCTTTCTTCATGAAGAAGTAACGCCGCATATTGTTCATAGAGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTCACACCGAAGATTTCAGATTTTGGTCTTGCAAAACTTATTCCATCATATATGACTCATGTCAGCACACGCGTAGCAGGAACAATAGGCTATTTGGCACCAGAGTACGCAATAAGGGGGCAATTGACTCGTAAAGCAGATATATACAGTTTTGGTGTCCTCCTTATAGAGATAGTCAGTGGGAGATCTAACACAAATATCAAATTACCAATTGCAGATCAATATATTCTAGAAAAGACATGGGAACTTTACGAGCGAAACGAATTGGTACAGCTGGTAGACATATCACTAAACGGGGGTTTCGATCCAGTGGAGGCTTGTAAAATTCTGAAGATTGCCCTTCTTTGTACTCAGGACACTCCTAAGCTCCGGCCAACCATGTCTTCTGCAGTCAAAATGCTCACCGGAGAAATTGATATTAACGAAAGTAAAATAACAAAACCGGGCTTAATTTCAGATGTTATGGATCTTAAAGTTAGGGGAGCTAAGAAAAATAAAGATATGGAGAGTACATCTTCATACAATGCTTCCTCTGGTTCAGATAGCCAGGGTACTACTACTGCAACAACTTCAACCTTCACTATAAAATATGATAAAAGCATGTAG 1155 0.3896 MTCFSFLFGKNVSSDIRRDPEIDQGLSGIRIKVYTYKELKNASDNFSLANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIQHENLVILYGCCVEGDHRILVYNYLENNSLAQTLLAGGHSNIYFDWQTRCKICIGVARGLAFLHEEVTPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLIEIVSGRSNTNIKLPIADQYILEKTWELYERNELVQLVDISLNGGFDPVEACKILKIALLCTQDTPKLRPTMSSAVKMLTGEIDINESKITKPGLISDVMDLKVRGAKKNKDMESTSSYNASSGSDSQGTTTATTSTFTIKYDKSM 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00290 384 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Vifa4g00290 384 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Vifa4g00290 384 FunFam cold-responsive protein kinase 1 122 333 - -
Vifa4g00290 384 CDD STKc_IRAK 52 319 - -
Vifa4g00290 384 FunFam cold-responsive protein kinase 1 18 121 - -
Vifa4g00290 384 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 361 - -
Vifa4g00290 384 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Vifa4g00290 384 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Vifa4g00290 384 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00290 384 PIRSF TyrPK_CSF1-R 283 382 - -
Vifa4g00290 384 PIRSF TyrPK_CSF1-R 42 129 - -
Vifa4g00290 384 PIRSF TyrPK_CSF1-R 137 258 - -
Vifa4g00290 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vifa4g00290 384 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00290 384 Pfam Protein kinase domain 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00290 384 MobiDBLite consensus disorder prediction 349 371 - -
Vifa4g00290 384 MobiDBLite consensus disorder prediction 351 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00290 Vifa-Chr4 63395689 63397967 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00290 17 336 Receptor kinase-like Gene Family AT1G56120 53.560 1.63e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00290 Pkinase 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00290 - - lja:Lj3g3v0422690.3 573.163