Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00289 ATGCTGACAGAAGCAGAAGACCGTAATTCCTTCAATTCTGTGTTGGGACGCATCTTAGGATGCAAAATCTGTAGTCGTAATCGAAGGCATCGAAGCCACGAGAAATCTTTCACTCACAGCAACTCCATACATGAAATCGAACCGTTAGATGATACTAATATGGAGTTTCTTGGAGTTCTCGGTAAAGGAAGTTCCGGTACGGTTTCTCAATACCGTATCATCAAAGATAACAGCATTGTGGCCATCAAACAAATTTCGATAGAGAGCATTTCCAATGCTGTTCCCGGTTGCATCGTCAGAGAAGTCTCGTTTCTAAAAGAATTGAATCATCCAAACATTGTTAGGTTATTGAATGTAACGAGCAATAAGGATACAAGACTGGTGAGCCTTGTTTTCGAGTGTCTTGATTGCGATCTTAACACATACATTAAACAGAATGAACGCTACGGTTCATCAATTAATAATCCCTTCACAAGAAAGAGTTTGCTATATCAGATATTATCTGCAGTGGAGTACTGTCATTCTCATAAGATTATTCACCGAGACTTAAAACCATGTAATCTTCTAATCGATCATAAAAAAATGATAATCAAACTGGCAGATTTTGGTTGGGCTAGAGAGTTAGGAGATCCTGACATGTTCTATACTGAGATGATAGCAACTCGGTGGTATAGGGCACCTGAAGTTTTGTTTCATAACGGTCAATATTCAACTCCAATGGACATTTGGTCTGTGGGCTGTATATTTGGTGAGATGGTACTTGGACAACCAATACACAGTCTTTTTTATTGCATGGGTGAGCTAAAGCTGATTTTCAGAATGTTTGGTACACCAACAGAGGAAACATGGCCAGGGGTCACTAAGTTATGTGCTAACCTTCAAGACTATCCCAAATCTGACCCAATGGACCTTTCAACAATTTTTCATGATCTCGATTCAACTGGTCTTAATCTTCTAACGAGGATGCTTTGCCTGGACCCAAACAAGAGGATTTCAGCCGAAGATGCTCTAAAGCATGCTTACTTTAATGACTTGGATCAGTCAGCGAATAAAAAAATTAGGGAGGGTGGCGGCAACAACAATAACCCAGAAGAGTTTGCGGTGATGAGGGAGGGTGGGAGTAGCACCACCAACAACAACAATGTACAAGAATTTCCGATGACCATGGAAGGTGAAAGAAGCACCACCATGAACAACAATGAAGAGTTTGCGGAGGGGTGTTTGCTGTCGATCAGGACAGTATTTGGTGAAGAATTTGAAGGCCAAGTTGTTACGTTTGATCGTCCCTCCAACATGCTCGCACTCATAGAAAGATCCAAAGATGGCCCTCTTGGAAACATTAGGATTTTGAAAGCTGATTACATCCAAGACTTCACCTTATTAGGTCAATATCCATATAAGTGCTACCTTGATCTCAATGTTCTCCAAGCAAGGGAAGAAGTTGCCATTAGACAAGCAGAAGCAGATGCTGAGAGGATTGGGGTTGGGGTTACAAGTGTAGCACAGAACATCTTTGATGCTTTATCTAAAACGCTTCCAGTCCGCTGGGACAAGACTGTCATAGTTGTGATGAATGAGGTGCGTATCAGCAGTCCTTATCACTCGGAATGTGTGATTGGTGGTACTCCGGATGCAAATAACCGGGTGAAGAAAGTGCTTAAGATGTTGAGGAAGAGGTTGCAACTTTCAGGTTCTGATGATCTTTGTTGA 1710 0.4158 MLTEAEDRNSFNSVLGRILGCKICSRNRRHRSHEKSFTHSNSIHEIEPLDDTNMEFLGVLGKGSSGTVSQYRIIKDNSIVAIKQISIESISNAVPGCIVREVSFLKELNHPNIVRLLNVTSNKDTRLVSLVFECLDCDLNTYIKQNERYGSSINNPFTRKSLLYQILSAVEYCHSHKIIHRDLKPCNLLIDHKKMIIKLADFGWARELGDPDMFYTEMIATRWYRAPEVLFHNGQYSTPMDIWSVGCIFGEMVLGQPIHSLFYCMGELKLIFRMFGTPTEETWPGVTKLCANLQDYPKSDPMDLSTIFHDLDSTGLNLLTRMLCLDPNKRISAEDALKHAYFNDLDQSANKKIREGGGNNNNPEEFAVMREGGSSTTNNNNVQEFPMTMEGERSTTMNNNEEFAEGCLLSIRTVFGEEFEGQVVTFDRPSNMLALIERSKDGPLGNIRILKADYIQDFTLLGQYPYKCYLDLNVLQAREEVAIRQAEADAERIGVGVTSVAQNIFDALSKTLPVRWDKTVIVVMNEVRISSPYHSECVIGGTPDANNRVKKVLKMLRKRLQLSGSDDLC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00289 569 ProSiteProfiles Protein kinase domain profile. 54 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00289 569 SMART AD_2 466 552 IPR019181 -
Vifa4g00289 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vifa4g00289 569 Gene3D Phosphorylase Kinase; domain 1 56 134 - -
Vifa4g00289 569 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Vifa4g00289 569 SMART serkin_6 54 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00289 569 Pfam Protein kinase domain 57 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00289 569 PANTHER CELL DIVISION PROTEIN KINASE 54 342 - -
Vifa4g00289 569 Pfam Anticodon-binding domain 470 552 IPR019181 -
Vifa4g00289 569 CDD STKc_CDK_like 55 342 - -
Vifa4g00289 569 Gene3D Transferase(Phosphotransferase) domain 1 135 351 - -
Vifa4g00289 569 FunFam Mitogen-activated protein kinase 152 358 - -
Vifa4g00289 569 ProSiteProfiles AD domain profile. 468 561 IPR047574 -
Vifa4g00289 569 SUPERFAMILY Protein kinase-like (PK-like) 55 345 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00289 Vifa-Chr4 62932733 62935564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00289 60 345 Core Cell Cycle Gene Families AT3G48750 45.105 1.88e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa4g00289 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00289 K02206 - gmx:100799974 314.309