Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00283 ATGGGCAGTGATGCACTGAGAAGCGAAGGGTACTATACGCTCAACGATTTGAGTTTCGATTTCAAGGAATATGAAGGAACTTTCTCTATCTGCTTTTGGGTTTATTTCATGAATTCAACTACATTCCCTTCTGTCATTCTTCATCAGGTTCACGATGATGTTTCTGAAAGTGCTCCTTTTCTTGTGATTAGCGACAATAACAAAATCAATGTTTTCCCAGTTCTTTACTTACATGAAGGAGCTTCTGCAACTTGCATGGGTTCTTGGACAGAAGTTCCACATGCTACTGTCGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATATTGGATGCGAGGTTTGTCCAAATTACATTCAGCTTCACATTAATGGGGAAGTTGTAGGAGAAAAGTCAATGTCTTCCTTATTAAATAAGGAATCCAATTCAAATAATTTGAAGGGAATAACTTTGGCTAATGTATGTGGAGACAGAAATATTGTGCAGGGTTATGTGCACAACTTTGAAGGATTCCATACTGTTTCTTCCATCAAAGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCATCTGTCTCTGAGGTTGAAGAAGAAAGTGACGGTGTTTGGGGCATTGTCGGTGGAAAAGCATCATGTCGGAGGAACTTTTCTTTAGACGTTGTTTTATCAGATGCATTTGGACAACCTGTACATAAGGATAATGAGGTTTTTGCTTCACTTGTATATGCTGACACGGGGGCTCCAGTGGAGAATACAACTGATGATGAAGCCCCTCTTTTGACTAGCTATGATGGAATTGAATTTTCTTCTTGTGAAAGACCTAGTAAGTTTTTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCAAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTGTGTGCCAAAATTAGGAAATTATCCTTTCCTTCAGACAGACACCCGTCCAATTCGATGCATCTCTAGGAGCCGTAACAGTAAATTGTCCACGTTGGTGTGGAAAAAGTCAACACATGCTCTCCAAAGACTCAATTTGTCACAATCTTCAGCAATTGAAGAAGTGTCGTTGGAACGTATGAATTCTAGCCATGAAGAAAAAACCAATCCACTGATGAAGCGGTTTAGAGTTGGACTTGACAAGATATCAATATCAGTTATGACCGAGCCCAACTTAAAGCAATCTGGTGTGGAATGTAATTCTCACGTATCGACTGCTAATCAGGTTGAAAATGGGTTTCCTGAAAGCTTGGATGACAGATCTCTTAATGAAGAAGCAGACGACTCTCCTTCTGAATCATCAGAGAGTACAGGGGAGAGAAACTCACCTTCCAATAATATGGAAAGTAGAAGATACCCAATATCTGATATGACCATTTTCAAATACTGCCTAGGAGGCTTGGCTGAGAGATCTCATATGCTTAAAGAAATTGCCATCTCTGCTTCTGATGAAGACATTTCAGCGTTGGCTTATCATGTTTCTCACTATTCAGGATGTTCCCACCATGGAAACCAAATATTAATTTCCAAGAGGTTGATAGAAGATGGAACAAATCTTTGGATGGCGATGTCTCCAAACAAAAACCACGTTCCTTGGGAAAGAGCGGTGTATGAGATTGAAGAGAAATTCATGAAGATTGCTTCTCGTGGATCAAGATCTCTATCCCGTCAGGACTTTGAGATTCTACGAAGGATTGCTGGATGTGAAGAGTATTTAACACAGGAGAACTTTGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCGTGTGTAATATCCAGGGACTGGGTAAATCCTATATGGAATTCCATATCACCTAAATGGATTGAAGGATTCATCACCAAAGAGGATGCAGAAGCTTCACTTCAAGGCCCGGGAGGATTTCAAGAACCTGGTACTTTTATACTACGGTTCCCAACCTCAAGAAGCTGGCCTCACCCAGATGCTGGTAGCCTAACGGTTACTTATGTTGGCAGTGACTACAAACTTCGCCACAGGCTACTTTCAATGGATCATATATATCGCTCTGACAGAATAACTGACGTGAAACCATTGCAAGATATGCTACTGGCAGAACCCGAGCTGACTCGGTTGGGGAGGGTAATAAGAAGGTATTAA 2136 0.4073 MGSDALRSEGYYTLNDLSFDFKEYEGTFSICFWVYFMNSTTFPSVILHQVHDDVSESAPFLVISDNNKINVFPVLYLHEGASATCMGSWTEVPHATVDFEFPLEKWVHIGCEVCPNYIQLHINGEVVGEKSMSSLLNKESNSNNLKGITLANVCGDRNIVQGYVHNFEGFHTVSSIKDHHLKDPPLKLSIDESSVSEVEEESDGVWGIVGGKASCRRNFSLDVVLSDAFGQPVHKDNEVFASLVYADTGAPVENTTDDEAPLLTSYDGIEFSSCERPSKFLLGRASFKLRISQLSSKCDNRLFLIRFCVPKLGNYPFLQTDTRPIRCISRSRNSKLSTLVWKKSTHALQRLNLSQSSAIEEVSLERMNSSHEEKTNPLMKRFRVGLDKISISVMTEPNLKQSGVECNSHVSTANQVENGFPESLDDRSLNEEADDSPSESSESTGERNSPSNNMESRRYPISDMTIFKYCLGGLAERSHMLKEIAISASDEDISALAYHVSHYSGCSHHGNQILISKRLIEDGTNLWMAMSPNKNHVPWERAVYEIEEKFMKIASRGSRSLSRQDFEILRRIAGCEEYLTQENFEKLWCWLYPVACVISRDWVNPIWNSISPKWIEGFITKEDAEASLQGPGGFQEPGTFILRFPTSRSWPHPDAGSLTVTYVGSDYKLRHRLLSMDHIYRSDRITDVKPLQDMLLAEPELTRLGRVIRRY 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00283 711 Gene3D SH2 domain 602 709 IPR036860 -
Vifa4g00283 711 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 20 701 IPR001217 GO:0003700|GO:0006355|GO:0007165
Vifa4g00283 711 MobiDBLite consensus disorder prediction 414 457 - -
Vifa4g00283 711 SUPERFAMILY Concanavalin A-like lectins/glucanases 11 166 IPR013320 -
Vifa4g00283 711 Gene3D - 4 178 - -
Vifa4g00283 711 MobiDBLite consensus disorder prediction 442 457 - -
Vifa4g00283 711 SUPERFAMILY SH2 domain 609 704 IPR036860 -
Vifa4g00283 711 ProSiteProfiles Src homology 2 (SH2) domain profile. 614 711 IPR000980 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00283 Vifa-Chr4 60362021 60384033 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Vifa4g00283 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00283 - - cam:101502730 1144.41