Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00282 ATGGGCAGTGATGCACTGAGAAGCGAAGGGTACTATACGCTCAACGATTTGAGTTTCGATTTCAAGGAATATGAAGGAACTTTCTCTATCTGCTTTTGGGTTTATTTCATGAATTCAACTACATTCCCTTCTGTCATTCTTCATCAGGTTCACGATGATGTTTCTGAAAGTGCTCCTTTTCTTGTGATTAGCGACAATAACAAAATCAATGTTTTCCCAGTTCTTTACTTACATGAAGGAGCTTCTGCAACTTGCATGGGTTCTTGGACAGAAGTTCCACATGCTACTGTCGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATATTGGATGCGAGGTTTGTCCAAATTACATTCAGCTTCACATTAATGGGGAAGTTGTAGGAGAAAAGTCAATGTCTTCCTTATTAAATAAGGAATCCAATTCAAATAATTTGAAGGGAATAACTTTGGCTAATGTATGTGGAGACAGAAATATTGTGCAGGGTTATGTGCACAACTTTGAAGGATTCCATACTGTTTCTTCCATCAAAGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCATCTGTCTCTGAGGTTGAAGAAGAAAGTGACGGTGTTTGGGGCATTGTCGGTGGAAAAGCATCATGTCGGAGGAACTTTTCTTTAGACGTTGTTTTATCAGATGCATTTGGACAACCTGTACATAAGGATAATGAGCAGGTTTTTGCTTCACTTGTATATGCTGACACGGGGGCTCCAGTGGAGAATACAACTGATGATGAAGCCCCTCTTTTGACTAGCTATGATGGAATTGAATTTTCTTCTTGTGAAAGACCTAGTAAGTTTTTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCAAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTGTGTGCCAAAATTAGGAAATTATCCTTTCCTTCAGACAGACACCCGTCCAATTCGATGCATCTCTAGGAGCCGTAACAGTAAATTGTCCACGTTGGTGTGGAAAAAGTCAACACATGCTCTCCAAAGACTCAATTTGTCACAATCTTCAGCAATTGAAGAAGTGTCGTTGGAACGTATGAATTCTAGCCATGAAGAAAAAACCAATCCACTGATGAAGCGGTTTAGAGTTGGACTTGACAAGATATCAATATCAGTTATGACCGAGCCCAACTTAAAGCAATCTGGTGTGGAATGTAATTCTCACGTATCGACTGCTAATCAGGTTGAAAATGGGTTTCCTGAAAGCTTGGATGACAGATCTCTTAATGAAGAAGCAGACGACTCTCCTTCTGAATCATCAGAGAGTACAGGGGAGAGAAACTCACCTTCCAATAATATGGAAAGTAGAAGATACCCAATATCTGATATGACCATTTTCAAATACTGCCTAGGAGGCTTGGCTGAGAGATCTCATATGCTTAAAGAAATTGCCATCTCTGCTTCTGATGAAGACATTTCAGCGTTGGCTTATCATGTTTCTCACTATTCAGGATGTTCCCACCATGGAAACCAAATATTAATTTCCAAGAGGTTGATAGAAGATGGAACAAATCTTTGGATGGCGATGTCTCCAAACAAAAACCACGTTCCTTGGGAAAGAGCGGTGTATGAGATTGAAGAGAAATTCATGAAGATTGCTTCTCGTGGATCAAGATCTCTATCCCGTCAGGACTTTGAGATTCTACGAAGGATTGCTGGATGTGAAGAGTATTTAACACAGGAGAACTTTGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCGTGTGTAATATCCAGGGACTGGGTAAATCCTATATGGAATTCCATATCACCTAAATGGATTGAAGGATTCATCACCAAAGAGGATGCAGAAGCTTCACTTCAAGGCCCGGGAGGATTTCAAGAACCTGGTACTTTTATACTACGGTTCCCAACCTCAAGAAGCTGGCCTCACCCAGATGCTGGTAGCCTAACGGTTACTTATGTTGGCAGTGACTACAAACTTCGCCACAGGCTACTTTCAATGGATCATATATATCGCTCTGACAGAATAACTGACGTGAAACCATTGCAAGATATGCTACTGGCAGAACCCGAGCTGACTCGGTTGGGGAGGGTAATAAGAAGGTATTAA 2139 0.4077 MGSDALRSEGYYTLNDLSFDFKEYEGTFSICFWVYFMNSTTFPSVILHQVHDDVSESAPFLVISDNNKINVFPVLYLHEGASATCMGSWTEVPHATVDFEFPLEKWVHIGCEVCPNYIQLHINGEVVGEKSMSSLLNKESNSNNLKGITLANVCGDRNIVQGYVHNFEGFHTVSSIKDHHLKDPPLKLSIDESSVSEVEEESDGVWGIVGGKASCRRNFSLDVVLSDAFGQPVHKDNEQVFASLVYADTGAPVENTTDDEAPLLTSYDGIEFSSCERPSKFLLGRASFKLRISQLSSKCDNRLFLIRFCVPKLGNYPFLQTDTRPIRCISRSRNSKLSTLVWKKSTHALQRLNLSQSSAIEEVSLERMNSSHEEKTNPLMKRFRVGLDKISISVMTEPNLKQSGVECNSHVSTANQVENGFPESLDDRSLNEEADDSPSESSESTGERNSPSNNMESRRYPISDMTIFKYCLGGLAERSHMLKEIAISASDEDISALAYHVSHYSGCSHHGNQILISKRLIEDGTNLWMAMSPNKNHVPWERAVYEIEEKFMKIASRGSRSLSRQDFEILRRIAGCEEYLTQENFEKLWCWLYPVACVISRDWVNPIWNSISPKWIEGFITKEDAEASLQGPGGFQEPGTFILRFPTSRSWPHPDAGSLTVTYVGSDYKLRHRLLSMDHIYRSDRITDVKPLQDMLLAEPELTRLGRVIRRY 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00282 712 SUPERFAMILY SH2 domain 610 705 IPR036860 -
Vifa4g00282 712 MobiDBLite consensus disorder prediction 443 458 - -
Vifa4g00282 712 Gene3D SH2 domain 603 710 IPR036860 -
Vifa4g00282 712 ProSiteProfiles Src homology 2 (SH2) domain profile. 615 712 IPR000980 -
Vifa4g00282 712 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 20 702 IPR001217 GO:0003700|GO:0006355|GO:0007165
Vifa4g00282 712 SUPERFAMILY Concanavalin A-like lectins/glucanases 11 166 IPR013320 -
Vifa4g00282 712 Gene3D - 4 178 - -
Vifa4g00282 712 MobiDBLite consensus disorder prediction 415 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00282 Vifa-Chr4 60362021 60384033 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Vifa4g00282 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00282 - - cam:101502730 1150.96