Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00278 ATGACGCAGAAAATTCAGTCCAAGAAGGATTCGAAAGAGTTGGAGTTTTTCACTGAGTATGGGGAAGCGAACCGATACCAGATTCTTGAGATTATTGGAAAGGGGAGCTATGGAGTTGTTTGTGCAGCGATTGACACACACACTGGGGAAAAGGTTGCCATAAAGAAGATTCATGATGCGTTTGAGCATATTTCTGACGCAGTTAGGATCCTCCGTGAAGTCAAGTTGCTGAGGCTTTTAAGACACCCTGATGTTGTTGATATTAAGAGGATCATGTTGCCGCCATCAAAGAGAGAGTTTAGAGATATTTATGTGGTTTTTGAGCTCATGGAGTCTGATCTCCATCAAGTCATCAAAGCTAATGATGACCTGACTCGGGAACACCATCAGTTTTTTCTTTATCAGATGCTGCGTGCTTTGAAGTATATGCATTCAGCTAATGTGTACCACAGAGATCTTAAGCCTAAGAATATATTGGCTAACGCCAATTGCAAGCTCAAAATCTGTGATTTTGGACTGGCAAGAGTTTCATTTAATGATGCTCCAACATCAATATTTTGGACGGACTATGTTGCTACAAGATGGTATAGAGCCCCAGAGCTGTGTGGATCATTCTCATCTAAGTACACACCAGCAATTGATATATGGAGCATTGGATGCATTTTTGCCGAGGTGCTGTTGGGAAAGCCACTGTTTCCTGGCAAAAGTGTCGTGCATCAGTTAGATTTGATTACCGACCTTCTTGGGACACCATTGCCTGAAACTATTACAGGAGTTAGAAATGATAATGCAAGGAAGTACTTGTCGGGAATGCGGAAGAAACCTCCTGTGCCATTTGAACACAAATTCTCAGATGCTGATCCATTGGCACTTCGCCTTTTGCAGAGGCTTCTAGCCTTTGATCCAAAAGATCGACCAACTGCCGAACAGGCACTGGCTGATCCTTACTTTAAGGGCTTGGCAAAAGTGGAAAGAGAACCTTCTTGTAAGCCAATCTCAAAATTGGAATTTGAGTTTGAGAGGAGACGTATAACAAAGGACGATGTTAGGGTACTAGTATATCGGGAAATACTGGAATATCATCCTCAACTGCTCAAAGATTACTTGAATGGAACCGAAAGCGCCAATTTCCTCTATCCTAGTGCAATAGATCAATTAAGAAAGCAATTTGCTTATTTTGAGGAAAATGATGGTAAAAGTGGACCTGTGCCTGCTCCTGAAAGAAAGCATGTATCTGTTCCAAGGTCCACTGTTCACCCTAGTAAGATTCTTCCCAGTAAGCAGTCAACCCTTGCTTTGTATGAGAACAAGCAAATGGCAGAAGAGACATCTAATAAGAGTTTGAGAGGAGTTGGAGAAAATTCTGGAAATCAGATAAGGAGTGTACAGCCCCCACCACGGGTGCCAGCTAAGCCAGGGAGAGTGGTAGGCCCAGTTCTACACTACGAATATGAGAGAATCACAAAATCTTCTAACGACCCAAGGATGGTTTACCCAAATACTACTCCATCAGTCTCGACTCACAATGTCTTTAGTACCCATCCCTCGAACCCAAAGACTACATCAAACACACACAAGGACTTTTCACAAGACAAGAATGAATTCCAGTCCCAGCAGTACAACTTACAAGCTGCACCAACCACTGATTTGAACAATTACCCATACCGCCGGCGAGGAAGTAACAATAACCTAAATGATCATGTAACAACTATGGATGCAAAACTGCTGCAGACACAATCTCATCTCGGCGTAGTTGGTGCTGCAGCAGTAGCCGTTGCCTCCCACAATCACAGGTATTCAAGGGGTATTCAGTACAGTTTGTCTTAG 1827 0.4297 MTQKIQSKKDSKELEFFTEYGEANRYQILEIIGKGSYGVVCAAIDTHTGEKVAIKKIHDAFEHISDAVRILREVKLLRLLRHPDVVDIKRIMLPPSKREFRDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHSANVYHRDLKPKNILANANCKLKICDFGLARVSFNDAPTSIFWTDYVATRWYRAPELCGSFSSKYTPAIDIWSIGCIFAEVLLGKPLFPGKSVVHQLDLITDLLGTPLPETITGVRNDNARKYLSGMRKKPPVPFEHKFSDADPLALRLLQRLLAFDPKDRPTAEQALADPYFKGLAKVEREPSCKPISKLEFEFERRRITKDDVRVLVYREILEYHPQLLKDYLNGTESANFLYPSAIDQLRKQFAYFEENDGKSGPVPAPERKHVSVPRSTVHPSKILPSKQSTLALYENKQMAEETSNKSLRGVGENSGNQIRSVQPPPRVPAKPGRVVGPVLHYEYERITKSSNDPRMVYPNTTPSVSTHNVFSTHPSNPKTTSNTHKDFSQDKNEFQSQQYNLQAAPTTDLNNYPYRRRGSNNNLNDHVTTMDAKLLQTQSHLGVVGAAAVAVASHNHRYSRGIQYSLS 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00278 608 Gene3D Transferase(Phosphotransferase) domain 1 112 340 - -
Vifa4g00278 608 ProSiteProfiles Protein kinase domain profile. 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00278 608 MobiDBLite consensus disorder prediction 533 564 - -
Vifa4g00278 608 Gene3D Phosphorylase Kinase; domain 1 41 363 - -
Vifa4g00278 608 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 376 - -
Vifa4g00278 608 FunFam Mitogen-activated protein kinase 112 340 - -
Vifa4g00278 608 ProSitePatterns MAP kinase signature. 61 164 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa4g00278 608 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524
Vifa4g00278 608 MobiDBLite consensus disorder prediction 438 474 - -
Vifa4g00278 608 FunFam Mitogen-activated protein kinase 15 120 - -
Vifa4g00278 608 MobiDBLite consensus disorder prediction 502 564 - -
Vifa4g00278 608 SMART serkin_6 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00278 608 MobiDBLite consensus disorder prediction 397 421 - -
Vifa4g00278 608 MobiDBLite consensus disorder prediction 438 462 - -
Vifa4g00278 608 Pfam Protein kinase domain 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00278 608 SUPERFAMILY Protein kinase-like (PK-like) 20 321 IPR011009 -
Vifa4g00278 608 CDD STKc_TDY_MAPK 25 362 - -
Vifa4g00278 608 MobiDBLite consensus disorder prediction 502 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00278 Vifa-Chr4 59511636 59516136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00278 3 583 MAP Kinase Gene Family AT1G53510 65.772 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa4g00278 Pkinase 1.1e-65 CL0016