Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00266 ATGCCAGGGAATAAATGCAATGGTGATTCCAATCCTATACCGGGACGTGTAGAAAGACTCTTAAAAGAGAGAGAGTTGAGAAAAAGAGGAAGTGAAAACAATGAGTACTTGGAGCAGGATCAAGAGAAAGATGATGTTGACAAAATATCATCATCATCATCATCAATATCATCATCAATAACTGAGAGAAGACAACAAGAAGGAGAAGATGTTGTTGGAAAGTATGGTAGTAATAATAATAGACAGAGGCTTTTGGTTGTGGCTAACAGATTGCCCGTGTCCGCCATTAGAAAAGGTGAAGATAGTTGGTCTTTGGAGATAAGTGCTGGTGGCCTCGTTAGTGCTCTCCTAGGTGTGAAGGAATTTGAGGCAAGATGGATAGGTTGGGCAGGTGTCAATGTTCCAGATGAGGTTGGACAGAAGGCACTCACTGAAGCATTAGCTGAAAAGAGGTGTATCCCGGTATTTCTAGATGAAGAGATTGTTCATCAATATTACAATGGCTATTGCAACAACATTTTATGGCCCCTTTTCCATTACCTTGGACTTCCACAAGAAGACCGTCTTGCCACCACACGTAGTTTCCAATCTCAATTTTTGGCCTATGAGAAAGCAAATCAAATGTTTGCTGATGTTGTGAACCAACATTATGAAGAGGGTGATATTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCTTGAAGAAATATAACAGTAAAATGAAAGTTGGGTGGTTTCTTCACACCCCTTTTCCTTCTTCTGAAATTCACAGGACACTGCCTTCTCGTGACGAGCTTTTGCATTCTGTTCTTGCAGCTGATTTAGTTGGTTTTCACACCTATGATTATGCAAGACATTTTGTTAGTGCCTGTACTCGCATCCTTGGACTTGAAGGTACACCTTACGGGGTTGAGCATCAAGGAAAGCTAACTCGAGTTGCTGCATTTCCAATTGGGATAGATTCAGAACGATTTATACGTGCGCTAGACCTTCCTCGGGTGCAGGAACATATCAAAGAATTGCAAGAAAGATTCAAAGGAAGAAAGGTAATGTTAGGTGTTGATCGCCTTGACATGATCAAAGGAATTCCTCAGAAAATTCTAGCATTTGAAAAGTTTTTGGAAGAAAATGCTCATTGGCGTGATAGAGTAGTTTTGCTTCAAATCGCCGTCCCAACAAGAACAGACGTTCCTGAATATCAAAAGCTTACAAGTCAGGTTCATGAAATTGTTGGTCGCATCAATGGTAGATTTGGATCATTGACTACTGTTCCTATACATCACCTGGATCGCTCTCTTGACTTTCATGAACTATGTGCTGTATACGCAGTTACTGATGTAGCGCTAGTCACATCTTTAAGGGATGGAATGAATCTTGTGAGCTATGAATTTGTGGCCTGCCAGGAGAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCAGCCCAGTCTCTTGGTGCTGGGGCAATTCTTGTCAACCCCTGGAATGTTACAGAAGTTGCTTCTGCAATTGCAAAGGCTCTGAATATGGAACCCTTGGAAAGAGAAAAGAGACATAAGCATAATTTTGTTCATGTGAAATCCCACACTGCACAAGAATGGGCAGCAACTTTTGTCAGTGAACTAAATGATACTGTTATCGAGGCACAACTAAGGACTAGACATGTTCCGCCTAGGCTTCCAACAGAGATTGCAATTAGGCGTTATCGACACTCAACTAATCGATTGCTCATTTTGGGATTCAATGGAACTTTAACAGAGCCGGTTGAGAAAACTGGTGATCAGATTAAAGAAATGGAACTTAAGGTGCATCCAGAACTGAGACAACCCTTAACAACACTTTGCAATGACCCAAATACCACAGTAGTTGTGCTCAGTGGAAGTGGTAGAAAAGTTTTAGATGAGTGTTTCAAAGAATACGACATGTGGTTGGCAGCAGAGAATGGGATGTTTTTACAACCTTCAAAAGGTGAATGGATGACAACAATGCCGGAGCACCTGAATATGGAATGGGTCGACAGCGTGAAACATGTTTTTGAATACTTCACAGAAAGAACCCCGAGGTCACACTTTAACTTTGAAGATAGAGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTCGAGTTTGGAAATCTTCAAGCAAGAGATATGCTGCAACATCTCTGTACAAGTCCCATTTCTAGTTCATCTGTCGAAATTGTTCAAGGCAGCCGATCGGTTGAGGTTAGAGCTCTAGGCGTTACAAAGGGAGCAGCTATTGACCGCATCCTCGGAGAGATAGTTCACAGTAAATCAATGACATCGCCAATTGATTATGTTCTTTGTATAGGACATTTTCAGGGAAAGGATGAAGATCTTTATACCTTTTTTGAGCCCGAGCTTCCATCTATCGGTGCTGGTCTTCCGCGAAGTAATATGGTACTAACAGAAGCAGTTAAGTTTCCTGTTGAGAAGAAACCAGCTAGTAGTAAAAATGGAGCAAAGTCATCATCATCTCAAAACAAGGGAGTCTCAAATTCTGATCAGAAGAAAACAAATAATCAAATATGCACTTCACCACGACGCCCGGCTCCAGAAAATACATCACGAAATGTCCTTGACCTGAAGAAGGAGAATTACTTCTCATGTTCTGTTGGGCGCAACGGAACCAATGCTCGGTATACACTTGACTCATCAGATCATGTTGTTGAGTTTCTGATGGATCTGGTGGATGCATTACCGCGCTCTTGTTAA 2754 0.4132 MPGNKCNGDSNPIPGRVERLLKERELRKRGSENNEYLEQDQEKDDVDKISSSSSSISSSITERRQQEGEDVVGKYGSNNNRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFLAYEKANQMFADVVNQHYEEGDIVWCHDYHLMFLPKCLKKYNSKMKVGWFLHTPFPSSEIHRTLPSRDELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEHQGKLTRVAAFPIGIDSERFIRALDLPRVQEHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAHWRDRVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTTVPIHHLDRSLDFHELCAVYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNVTEVASAIAKALNMEPLEREKRHKHNFVHVKSHTAQEWAATFVSELNDTVIEAQLRTRHVPPRLPTEIAIRRYRHSTNRLLILGFNGTLTEPVEKTGDQIKEMELKVHPELRQPLTTLCNDPNTTVVVLSGSGRKVLDECFKEYDMWLAAENGMFLQPSKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFNFEDRETSLVWNYKYADVEFGNLQARDMLQHLCTSPISSSSVEIVQGSRSVEVRALGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFQGKDEDLYTFFEPELPSIGAGLPRSNMVLTEAVKFPVEKKPASSKNGAKSSSSQNKGVSNSDQKKTNNQICTSPRRPAPENTSRNVLDLKKENYFSCSVGRNGTNARYTLDSSDHVVEFLMDLVDALPRSC 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00266 917 Gene3D Glycogen Phosphorylase B; 74 329 - -
Vifa4g00266 917 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 330 532 - -
Vifa4g00266 917 Pfam Trehalose-phosphatase 586 831 IPR003337 GO:0003824|GO:0005992
Vifa4g00266 917 SUPERFAMILY HAD-like 580 906 IPR036412 -
Vifa4g00266 917 CDD GT20_TPS 83 548 IPR001830 GO:0003824|GO:0005992
Vifa4g00266 917 MobiDBLite consensus disorder prediction 825 871 - -
Vifa4g00266 917 MobiDBLite consensus disorder prediction 830 866 - -
Vifa4g00266 917 Gene3D - 670 752 - -
Vifa4g00266 917 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 75 329 - -
Vifa4g00266 917 MobiDBLite consensus disorder prediction 24 49 - -
Vifa4g00266 917 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 83 548 IPR012766 GO:0003825|GO:0005992
Vifa4g00266 917 Pfam Glycosyltransferase family 20 83 548 IPR001830 GO:0003824|GO:0005992
Vifa4g00266 917 CDD HAD_TPP 581 800 - -
Vifa4g00266 917 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 909 IPR001830 GO:0003824|GO:0005992
Vifa4g00266 917 Gene3D - 583 766 IPR023214 -
Vifa4g00266 917 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 670 752 - -
Vifa4g00266 917 Gene3D Glycogen Phosphorylase B; 330 533 - -
Vifa4g00266 917 MobiDBLite consensus disorder prediction 24 75 - -
Vifa4g00266 917 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 82 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00266 Vifa-Chr4 53968768 53974165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00266 1 911 Trehalose Biosynthesis Gene Families AT1G78580 74.234 0.0 1406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00266 K16055 - gmx:100797320 1503.8