Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00256 ATGCCTAGTCGAATTGGTGACAGTCAATTTTCTGAAGCAATACCCAACTTTATACAGAGTTGGAAAAATCTTGAGATGCTCGTGATCCGAGGGAGTGGTTTGAGCGGGCCAATTCCTTCTGGAATTTCACTTTTGAAAAATCTCACTGACTTGACTATTACTGACTTGAATGGATCTGATTCACCTTTTCCACAACTTGAAAATATGTCAAAGCTATCAAAATTAGTATTGAGAAGTTGCAATATCATGGGAGCAGTACCTGAATATATTGGAAAGTTAACTACTCTGAAAGTGATGCTTTTTAAACACAATAGGGAACTATTCTTTATGTTAAATTCTATATTTATTCTTTCTCTGAAAAGAACTTATTCTGAATATCCTTTTCCGAGACCTCAGCAACAACAAATTAAGTGGACAAATCCCCATGAGCCTCGTGGGTCTAGAGAACATATACTTGCTCTGTCTGGATCGCTGTCTGACTGGATAGTTAAACCAGACTGTGTAAATCTGTCGTATAACAACTTCACTATAACAAGCTTTGAGCAGCAGACTTGTCAACAAGGAACTGTAAACTTGTTTGCGTCTTCTTTGACAGGAAACAGCTTAGGAAATGTTTCATGTTTGGAAAACTATCAATGTCCTAAAACTTGGTACTCCCTCTATATAAACTGTGGTGGAAAGAGCGTAACATTTGATGGAAATAAGACATATGATGATGATGATTCAACTGAGATGGAATCAGCAAGATATCGTCAAATTGGAACAAACTGGGCACTTATAACTGCTGGTCACTTTTTTGATAGTGGACGCCCTGACTACTACATATGGTCTAATGCAACAAAGCTTTCCGTCGAAAATGATACTGAACTGTACATGGACGCACACGTTTCTCCAAACTCTCTTACTTATTATGGATTCTGCATTGGAAATGGAAACTACACTGTGAATCTCCATTTTGCTGAAATAATGCTTAGTGATGATAAAACATTTAGCAGCAATGGAAGACGTGTATTTGACATCTACATCCAAAGAAATTTGGTGTTGAAGGATTTCGATATTGCAAAAGAGGCAGGTGGTGTTGGCAAGGCAGTCATTAAAACTTTTACTGCTGGTGTGACTAGAAATGCATTGGAGATTCGCTTAGGTTGGGCTGGGAAAGGAACAACTACTATCCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATATCAGTTGGTCCTGATTTTACACCCCCGTCGGAAAATAATAAAAACATGCCTGTAGGAGCTGTGGTTGCCATTGTGGCTGCGGGAGCAATTGTTATCATCTTTGTAATTGGCATAATGTGGTGGAAGGGCTGTTTAACACAGAAATGTTTAGGGGCAAGAGAGCAAAAGGGTCATGCTTCACAAACTGGCTTATACAGTTTACAGAAAATCAAAGCAGCAACAAACAACTTTGATGAATCCTTTAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGTGTTCTACAAGATAGCACAATTGTAGCGATTAAGCAGCTATCTTCAAAATCAACTCAAGGAACTCGTGAATTTATTAATGAGATAGGCATGATTTCTACTTTACAACACCCTAATCTTGTTAAGCTCTATGGCTTCTGTATGGAAGACGATCAATTGTTGTTGGTATATGAATACATGGAAAACAATAGCCTTGCTCATGCTTTATTTGTCAAGAAAGAAGACATAGAAAATCGTCAATTGAGATTGGAATGGAAAACTAGGAAGAGAATTTGTATTGGTATTGCTAAAGGTTTAGCTTACCTGCATGGAGAGACTAAAATAAAGATCATTCATAGGGACATCAAGGCCACTAATGTATTGCTAGATAAAGACCTCAACCCCAAAATATCTGATTTTGGTTTGGCAAAGCTCAACGAAGATGACAAAACCCACATGAACACCAGAATAGCTGGCACTTATGGATACATGGCTCCTGAGTATGCTATGCATGGTTATTTGACGGAGAAAGTAGATGTTTACAGTTTTGGAATTGTTGTGTTGGAAATTGTTAGCGGAACCAACAACACTGTTAGTCATCCTCAGGAGGAATGCTTCTCCCTTCTTGATTGGGTGCACCTTTTGAAGGAAAGAGATGATCTAATGGAGCTTGTTGATAGGAGATTGGGAGAAGACTTCAAGAAAGAGGAGGTAACGACGATGATCAATGTGGCTCTTTTATGCACTAGTTTTTCTCCGTCGCTCAGGCCCTCCATGTCTTCGGTAGTAAGCATGCTTGAAGGAAGAATAGATGTTGAAGAAGTGGTGGCAGAATCAACTGAGGTATTGGATGATAAGAAATATAAGGTGATGCAACAATACTACAAACAAAGAGGAGAAAGTAGCACAAGTGAAGTTCAAAGCCGAAGCCGGAGCATCGCAACAGATGAATCTAATGCCTTTATTTATGATACAGATTCTTCATGCTGGGAACCAAGAAATTAG 2475 0.3883 MPSRIGDSQFSEAIPNFIQSWKNLEMLVIRGSGLSGPIPSGISLLKNLTDLTITDLNGSDSPFPQLENMSKLSKLVLRSCNIMGAVPEYIGKLTTLKVMLFKHNRELFFMLNSIFILSLKRTYSEYPFPRPQQQQIKWTNPHEPRGSREHILALSGSLSDWIVKPDCVNLSYNNFTITSFEQQTCQQGTVNLFASSLTGNSLGNVSCLENYQCPKTWYSLYINCGGKSVTFDGNKTYDDDDSTEMESARYRQIGTNWALITAGHFFDSGRPDYYIWSNATKLSVENDTELYMDAHVSPNSLTYYGFCIGNGNYTVNLHFAEIMLSDDKTFSSNGRRVFDIYIQRNLVLKDFDIAKEAGGVGKAVIKTFTAGVTRNALEIRLGWAGKGTTTIPFGSVYGPLISAISVGPDFTPPSENNKNMPVGAVVAIVAAGAIVIIFVIGIMWWKGCLTQKCLGAREQKGHASQTGLYSLQKIKAATNNFDESFKIGEGGFGPVYKGVLQDSTIVAIKQLSSKSTQGTREFINEIGMISTLQHPNLVKLYGFCMEDDQLLLVYEYMENNSLAHALFVKKEDIENRQLRLEWKTRKRICIGIAKGLAYLHGETKIKIIHRDIKATNVLLDKDLNPKISDFGLAKLNEDDKTHMNTRIAGTYGYMAPEYAMHGYLTEKVDVYSFGIVVLEIVSGTNNTVSHPQEECFSLLDWVHLLKERDDLMELVDRRLGEDFKKEEVTTMINVALLCTSFSPSLRPSMSSVVSMLEGRIDVEEVVAESTEVLDDKKYKVMQQYYKQRGESSTSEVQSRSRSIATDESNAFIYDTDSSCWEPRN 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00256 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Vifa4g00256 824 ProSiteProfiles Protein kinase domain profile. 481 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00256 824 SUPERFAMILY L domain-like 8 178 - -
Vifa4g00256 824 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 217 409 - -
Vifa4g00256 824 FunFam Putative LRR receptor-like serine/threonine-protein kinase 557 768 - -
Vifa4g00256 824 Gene3D Transferase(Phosphotransferase) domain 1 557 783 - -
Vifa4g00256 824 SUPERFAMILY Protein kinase-like (PK-like) 464 757 IPR011009 -
Vifa4g00256 824 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 450 556 - -
Vifa4g00256 824 CDD STKc_IRAK 487 758 - -
Vifa4g00256 824 Pfam Protein kinase domain 484 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00256 824 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 791 - -
Vifa4g00256 824 SMART serkin_6 481 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00256 824 Gene3D - 219 408 - -
Vifa4g00256 824 Pfam Malectin domain 219 404 IPR021720 -
Vifa4g00256 824 Gene3D Phosphorylase Kinase; domain 1 450 556 - -
Vifa4g00256 824 Gene3D Ribonuclease Inhibitor 4 218 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00256 Vifa-Chr4 51540244 51548856 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00256 4 810 Receptor kinase-like Gene Family AT1G53420 48.834 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00256 Pkinase 7.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00256 - - gmx:100801071 969.148