Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00255 ATGGCCTTACTCTGTGGTTCACCGTCGGTCTCCTTCCCTTCATCTTCATTCACTCATCACAAAAACGCAACAACCAAATCTTCACTTATTGCTTCCCAATTTCCTCTCCCAACCCTTTCATTGTCAACTCGTACTACCCATTTCTCTCCCTCTTTCATTGTCCGTTCTCAACAGGACACTTCCCTCGTAGAACAAGATCCACGCTTCATCACTGTTGAACCCGAGCCCCGATTTCAAGGCCCGGACATTTGGAACACGACGTGGTATCCAAAAGCTTCGGATCATGTCAACACGGAGAAAACATGGTATGTTGTTGATGCGGAAGATAAAATTCTTGGGAGACTGGCATCAACTATTGCGAATCACATCCGAGGCAAGAATCTAGTGACTTATACGCCTAGTGTGGACATGGGTGCATTTGTGATTGTGGTAAATGCAGAAAAGGTTGCTGTAAGTGGGAAAAAGAGGACACAAAAGCTTTATCGGAGGCACTCAGGTCGACCTGGTGGTATGACAGTCGAGACATTTGATCAGCTGCAGAACAGAATTCCTGAAAGAATTGTTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGGACTCTATTCACACGCCTGAAGGTTTATAGTGGCCCGAATCATCCACATGAGGCGCAGCAGCCGATTGATTTGCCAATTAGGGATAAGAGAATACAGTTGCAGAGATAA 717 0.4616 MALLCGSPSVSFPSSSFTHHKNATTKSSLIASQFPLPTLSLSTRTTHFSPSFIVRSQQDTSLVEQDPRFITVEPEPRFQGPDIWNTTWYPKASDHVNTEKTWYVVDAEDKILGRLASTIANHIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQNRIPERIVEHAVRGMLPKGRLGRTLFTRLKVYSGPNHPHEAQQPIDLPIRDKRIQLQR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00255 238 PANTHER RIBOSOMAL PROTEIN L13 88 233 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa4g00255 238 SUPERFAMILY Ribosomal protein L13 97 229 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vifa4g00255 238 ProSitePatterns Ribosomal protein L13 signature. 192 214 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vifa4g00255 238 CDD Ribosomal_L13 102 215 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa4g00255 238 Hamap 50S ribosomal protein L13 [rplM]. 102 237 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa4g00255 238 Gene3D Ribosomal protein L13 91 234 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vifa4g00255 238 FunFam 50S ribosomal protein L13 86 229 - -
Vifa4g00255 238 Pfam Ribosomal protein L13 100 218 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa4g00255 238 NCBIfam 50S ribosomal protein L13 96 227 IPR005823 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00255 104 237 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.852 2.20e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00255 K02871 - gmx:100305981 345.895