Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00253 ATGTGTTTTGTTCTAAAAGCACAAAACCTTTCTGGTACTCTTCCACCTGATCTTGTGAGGTTGCCTTTTCTCCAAGAAATTGACCTAACCCTCAACTATCTTAATGGTACAATTCCTAAAGAATGGGCCACATTAAGTCTTGTAAACATTTCCTTCTATGGAAATCGTCTATCTGGTCCAATTCCAAAGGAGTTTGGAGACATCACCACTCTCAAAAGCTTGGTATTGGAATTCAACCAACTATCAGGAAATCTTCCTCCAGAACTTGGGAGTCTTAGCCAGATTGAAAGACTGCTTCTTTCCTCCAACAATTTCACTGGAGTGTTACCTGCAACATTTGCTAGGCTCACCGCATTGAAGCAATTTCGAATTGGTGACAGTCAATTCTCTGGAGCAATACCCAACTTTATACAGAGTTGGAAAAATCTTGAGATGCTCGTGATCCGAGGGAGTGGTTTGAGCGGGCCAATTCCTTCTGGAATTTCACTTTTGAAAAATCTCAGTGACTTGACTATTACTGACTTGAATGGATCTGATTCACCTTTTCCACAACTTGAAAATATGTCAAAGCTATCAAAATTAATATTGAGAAGTTGCAATATCATTGGAGCAGTGCCTGATTATCTTGGAAAGTTAACTAAACTGAAAGCGATAGACCTCAGCAACAACAAATTAAGTGGACAAATCCCCACGGGCTTCGGGGGTCTACAGAACATGTACATGCTATTTTTATCTGGGAATCAGCTGTCTGGACTGCTGCCTGACTGGATAGTTAAACCCGACTTTGTAGATCTGTCGTATAACAACTTCACTATAGCAAACTTTGAGCAGCAAACTTGTCAACAAGGAAGTGTAAACTTGTTTGCGTCTTCTTTGACGGGAAACAGCTTAGGAAATGTTTCATGTTTGGAAAACTATCAATGTCCTAAAACTTGGTACTCTCTCTACATAAACTGTGGTGGGAAGAGCATAACATATGATGGAAATAAGACATATGATGATGATTCAGCTGAGATGGAATCAGGAAGATATCGTCAAATTGGAACAAACTGGGCACTTATAACTGCTGGTCACTTTTTTGATAGTGGACGGTCGGACTACTACATATGGTCTAATGCAACAAAGCTTGCCGTCGACAATGGTACTGAACTGTACATGGATGCACGTGTTTCTCCAAATTCTCTTACTTATTATGCATTCTGCATTGGAAATGGAAACTACACTGTGAATCTCCATTTTGCTGAAATAATGTTCAGTGATGATAAAACATTTAGCAGCATTGGAAGACGTGTATTTGACATCTACATCCAGAGAAATTTGGTGTTGAAGGATTTCGATATTGCAAAAGAGGCAGGTGGTGTTGGCAAGGCAGTCATTAAAACTTTTACTGCTGGTGTGACTAGAAATGCATTGGAGATTCGCTTAGATTGGGCTGGGAAAGGAACAACTACTATCCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATATCAGTTGATCCTGATTTTACACCCCCGTCGGAAAATAATAAAAACATGCCTGTAGGAGCTGTGGTTGCCATTGTGGCTGCGGGAGCAATTGTTATCATCTTTGTAATTGGCATAATGTGGTGGAAGGGCTGTTTAACACAGAAATGTTTAGGGGCAAGAGAGCAAAAGGGCCATGCTTCACAAACTGGCTTATACAGTTTACAGAAAATCAAAGCAGCAACAAACAACTTTGATGAATCCTTTAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGTGTTCTACAAGATAGCACAATTGTAGCGATTAAGCAGCTATCTTCAAAATCAACTCAAGGATCTCGTGAATTTATTAATGAGATAGGCATGATTTCTACTTTACAACACCCTAATCTTGTTAAGCTCTATGGCTTCTGTATGGAAGACGATCAGTTGTTGTTGATATATGAATACATGGAAAACAATAGCCTTGCTCATGCTTTATTTGTCAAGAAAGAAGACATAGAAAATCGTCAATTGAGATTGGAATGGAAAACTAGGAAGAGAATTTGTATTGGTATTGCTAAAGGTTTAGCTTACCTGCATGGAGAGACTAAAATAAAGATCATTCATAGGGACATCAAGGCCACTAATGTATTGCTAGATAAAGACCTCAACCCCAAAATATCTGATTTTGGTTTGGCAAAGCTCAACGAAGATGACAAAACCCACATGAACACCAGAATAGCTGGCACTTATGGATACATGGCTCCTGAGTATGCTATGCATGGTTATTTGACGGAGAAAGTAGATGTTTACAGTTTTGGAATTGTTGTGTTGGAAATTGTTAGCGGAACCAACAACACTGTTGGTCATCCTCAGGAGGAATGCTTCTCCCTTCTTGATTGGGTGCACCTTTTGAAGGAAAAAGATGATCTAATGGAGCTTGTTGATAGGAGATTGGGAGAAGACTTCAAGAAAGAGGAGGTAACGACGATGATCAATGTGGCTCTTTTATGCACTAGTTTTTCTCCGTCGCTCAGGCCCTCCATGTCTTCGGTAGTAAGCATGCTTGAAGGAAGAACAGATGTTGAAGAAGTGGTTGCAGAATCAACTGAGGTATTGGATGATAAGAAATATAAGGTGATGCAACAATACTACAAACAGAGAGGAGAAAGTAGCACAAGTGAAGTTCAAAGCCGAAGCCGGAGCATCGCAACAGATGAATCTAATGCCTTTATTTATGATACAGATTCTTCATGCTGGGAACCAAGAAATTAG 2757 0.3975 MCFVLKAQNLSGTLPPDLVRLPFLQEIDLTLNYLNGTIPKEWATLSLVNISFYGNRLSGPIPKEFGDITTLKSLVLEFNQLSGNLPPELGSLSQIERLLLSSNNFTGVLPATFARLTALKQFRIGDSQFSGAIPNFIQSWKNLEMLVIRGSGLSGPIPSGISLLKNLSDLTITDLNGSDSPFPQLENMSKLSKLILRSCNIIGAVPDYLGKLTKLKAIDLSNNKLSGQIPTGFGGLQNMYMLFLSGNQLSGLLPDWIVKPDFVDLSYNNFTIANFEQQTCQQGSVNLFASSLTGNSLGNVSCLENYQCPKTWYSLYINCGGKSITYDGNKTYDDDSAEMESGRYRQIGTNWALITAGHFFDSGRSDYYIWSNATKLAVDNGTELYMDARVSPNSLTYYAFCIGNGNYTVNLHFAEIMFSDDKTFSSIGRRVFDIYIQRNLVLKDFDIAKEAGGVGKAVIKTFTAGVTRNALEIRLDWAGKGTTTIPFGSVYGPLISAISVDPDFTPPSENNKNMPVGAVVAIVAAGAIVIIFVIGIMWWKGCLTQKCLGAREQKGHASQTGLYSLQKIKAATNNFDESFKIGEGGFGPVYKGVLQDSTIVAIKQLSSKSTQGSREFINEIGMISTLQHPNLVKLYGFCMEDDQLLLIYEYMENNSLAHALFVKKEDIENRQLRLEWKTRKRICIGIAKGLAYLHGETKIKIIHRDIKATNVLLDKDLNPKISDFGLAKLNEDDKTHMNTRIAGTYGYMAPEYAMHGYLTEKVDVYSFGIVVLEIVSGTNNTVGHPQEECFSLLDWVHLLKEKDDLMELVDRRLGEDFKKEEVTTMINVALLCTSFSPSLRPSMSSVVSMLEGRTDVEEVVAESTEVLDDKKYKVMQQYYKQRGESSTSEVQSRSRSIATDESNAFIYDTDSSCWEPRN 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00253 918 Pfam Malectin domain 314 498 IPR021720 -
Vifa4g00253 918 FunFam Leucine-rich repeat receptor protein kinase EMS1 14 109 - -
Vifa4g00253 918 CDD STKc_IRAK 581 852 - -
Vifa4g00253 918 Gene3D Ribonuclease Inhibitor 70 137 IPR032675 -
Vifa4g00253 918 Gene3D Ribonuclease Inhibitor 3 69 IPR032675 -
Vifa4g00253 918 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 110 176 - -
Vifa4g00253 918 Gene3D Ribonuclease Inhibitor 138 286 IPR032675 -
Vifa4g00253 918 Gene3D Phosphorylase Kinase; domain 1 544 650 - -
Vifa4g00253 918 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 312 503 - -
Vifa4g00253 918 SUPERFAMILY L domain-like 7 271 - -
Vifa4g00253 918 Gene3D Transferase(Phosphotransferase) domain 1 651 877 - -
Vifa4g00253 918 FunFam Putative LRR receptor-like serine/threonine-protein kinase 651 862 - -
Vifa4g00253 918 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 885 - -
Vifa4g00253 918 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Vifa4g00253 918 Pfam Protein kinase domain 578 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00253 918 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 544 650 - -
Vifa4g00253 918 SMART LRR_typ_2 92 115 IPR003591 -
Vifa4g00253 918 SMART LRR_typ_2 212 235 IPR003591 -
Vifa4g00253 918 SMART LRR_typ_2 236 259 IPR003591 -
Vifa4g00253 918 SUPERFAMILY Protein kinase-like (PK-like) 558 851 IPR011009 -
Vifa4g00253 918 Gene3D - 312 502 - -
Vifa4g00253 918 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 182 273 - -
Vifa4g00253 918 ProSiteProfiles Protein kinase domain profile. 575 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00253 918 SMART serkin_6 575 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00253 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00253 Vifa-Chr4 50662931 50668698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00253 5 904 Receptor kinase-like Gene Family AT1G53420 54.125 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00253 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00253 - - psat:127081874 1220.3