Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00252 ATGTCAGATTGGAAATCTAAATATATGATCCTGTGTTTTTTTCTGGCTTTGAGTTTGTCTCTTCAACAGTTTGGATCCAACGCTCAACTCATACCACAAGATGAAGTGAATTCTCTACAAGCAATTTCAGATAAACTAAAGAACGTGAACTGGAAAGTCACAGAACGTTCTTGCATTGATGGTAGAGGCTTTGATAATGATAATGTAGATGATGATACATTGAGGAATGTCACATGCGATTGCACTTTCCAAAATAAAACTACTTGCCATGTTACTAGCATCTTTCTAAAGGGACAAAATATAGCTGGAGTCATGCCTAGTGAATTTGGAGATCTTACTCAATTGAAAATACTTGATCTTACACGGAACTATCTCGACGGCTCGATTCCTACGAGTTTTGCTAACAAATCTCTAGTCGTTTTGTCACTTTTAGGAAACCGATTAAGTGGTCCAGTTCCCGCAGAAATTGGTGATATTACTAGCTTGGAGGATTTGGTCTTAGAGAATAATCAACTTGGAGGACCACTTCCTGCTAGTCTTGGAAATTTGAGCAACTTGAAGAGATTGCTTCTTTCTTCGAATAATTTTACTGGCACGATACCGGAATCATTTAGCGAACTAAAGAATCTCACTGATTTTCGCATCGATGGAAGCAGTTTATCTGGACAGATACCTAGTTTTATTGGGAACTGGACCAAACTTGGGAGATTGGATATGCAGGGAACATCTATGGAAGGTCCAATTCCCTCTACCATATCTGAGTTGAAACTTTTGACTGAGCTGAGAATAAGTGATTTGAATGGACCAACTATGACATTTCCTAATTTGAAGGATTTGAAAAACTTGCAACTACTGGAGCTGAGAAATTGCTTAATCACAGGTCCTATTCCCGACTACATTGGCGAAATGACAAACTTAGTTACTTTAGATCTAAGCTTCAATATGTTTACTGGTTCAATCCCGAATTCAATTCAGGGATTGAAAAGACTAAATTACATGTTTATGACTAATAATTCTTTGAGTGGAGTGATTCAAGATTGGATACTGAACTTCAAAATTAACATAGATTTATCTTACAACAATTTTACAAAGTCTTCTGCAACTAGCTGCCAGCATCTGAATCTGAACTTGGCTTCGAGCTATTCGTCTTCAGCGGTCACTTCACCTTCAACGTTTTGTTTGAAGAGGAACCTTCCTTGCGCAGGAAAACCTCAATATGATTCATTGTTCATAAATTGTGGAGGACCAGAAGAAGATTTTGATGGAAATCACTATCAGGGGAGTTACAAAGTGAAGCTCCACTTTGCTGAGATAATGTTTTCTGATGACCAGACTTTTAAAAGTCTCGGAAGGCGCATATTTGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGGAAGAAGCTGGTGGAGTTGGAAAGGGAATCACTAAGGAATTCGATGTTGAAGTCAACGACAACACGTTGGAAATTCAGTTATATTGGGCAGGGAAAGGAACCACGGCCATTCCTGACAGAGGTGTATATGGACCTCTTATATCAGCTATCACAGTAACACCAAACTTTAAAAATCGCTCAGAAGGAATGTCCGCTGGAGTTATTATTGGAATTGTGGCTGCGTCATGTGTGCTTGTCATACTCATAGTCGTTGCCCTTTGGAAGATGGGTTTCCTTTGTGTAAAAGATCTAAGAGACAAAGACCTTCTTGATCTTAAAACAGGTTATTTCAGCTTGAGACAAATTAGAGCAGCTACTAATGACTTTGATCCTGCGAATAAGATTGGCGAAGGGGGTTTTGGACCAGTGTTCAAGGGTGTGCTGTCAGATGGTGATGTCATTGCTGTTAAGCAGCTATCCTCCAAATCAAAGCAAGGGAACCGCGAATTTGTTAATGAAATTGGAATGATATCTGCTTTGCAGCATCCGAATCTTGTTAAGCTCTATGGCTGTTGCATTGAAGGAAAGCAGTTGCTACTGATATATGAATACATGGAGAACAACTGTCTTGGCCGTGCACTTTTTGGTCATCAGGAACAGAAGCTGCATTTGGATTGGCCAACTAGAATGAAGATATGTCTCGGTATAGCAAAGGGATTAGCTTATCTTCACGAAGAATCAACACTGAAAATAGTACATAGAGACATTAAGGCAACTAATGTATTACTTGACAAGGATTTGAATGCCAAGATCTCTGACTTCGGTTTAGCCAAGCTTGATGATGAAGGGAACACCCATATCAGTACACGGGTAGCTGGAACAATTGGATACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGCGGAAAAAGCAACACAAATTTCAACCCAATGGAGGAGTTTGTATATCTTATGGATTGGGCCTATGATCTCCAAGAGCAAGGACGCCTTATGGAGCTGGTGGATCCAAATCTTGGTTCAAGGTACTCCACAGAGGAGGCCATGAGAATGCTGAACTTGGCATTGTTATGCACTAACACATCTCCCACTCATAGACCATCCATGACATTGGTAGTAAGCATGCTTGAAGGAAAAACTCCAATCCAAGCGCCAGTAATCAACCGCGGTGAGAGGGGCCACCATGCAAGACTCATAGCCTCGGAGTTGTTGTCAGAAGATAGTCAACCTCTTGATTCTTCTACATTTTCACACGAAAGCATAGATGGAAGACATGGATCATCAAATGGACCATGGGTTCCCGCCTCCATATCTCTTCAAAGTAAAGATGATTTTTCTTCGAGCAGTAAACTTCATTGA 2820 0.3989 MSDWKSKYMILCFFLALSLSLQQFGSNAQLIPQDEVNSLQAISDKLKNVNWKVTERSCIDGRGFDNDNVDDDTLRNVTCDCTFQNKTTCHVTSIFLKGQNIAGVMPSEFGDLTQLKILDLTRNYLDGSIPTSFANKSLVVLSLLGNRLSGPVPAEIGDITSLEDLVLENNQLGGPLPASLGNLSNLKRLLLSSNNFTGTIPESFSELKNLTDFRIDGSSLSGQIPSFIGNWTKLGRLDMQGTSMEGPIPSTISELKLLTELRISDLNGPTMTFPNLKDLKNLQLLELRNCLITGPIPDYIGEMTNLVTLDLSFNMFTGSIPNSIQGLKRLNYMFMTNNSLSGVIQDWILNFKINIDLSYNNFTKSSATSCQHLNLNLASSYSSSAVTSPSTFCLKRNLPCAGKPQYDSLFINCGGPEEDFDGNHYQGSYKVKLHFAEIMFSDDQTFKSLGRRIFDVSIQGFKYLKDFNIVEEAGGVGKGITKEFDVEVNDNTLEIQLYWAGKGTTAIPDRGVYGPLISAITVTPNFKNRSEGMSAGVIIGIVAASCVLVILIVVALWKMGFLCVKDLRDKDLLDLKTGYFSLRQIRAATNDFDPANKIGEGGFGPVFKGVLSDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGKQLLLIYEYMENNCLGRALFGHQEQKLHLDWPTRMKICLGIAKGLAYLHEESTLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDDEGNTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNFNPMEEFVYLMDWAYDLQEQGRLMELVDPNLGSRYSTEEAMRMLNLALLCTNTSPTHRPSMTLVVSMLEGKTPIQAPVINRGERGHHARLIASELLSEDSQPLDSSTFSHESIDGRHGSSNGPWVPASISLQSKDDFSSSSKLH 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00252 939 SMART serkin_6 592 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00252 939 MobiDBLite consensus disorder prediction 896 939 - -
Vifa4g00252 939 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 268 391 - -
Vifa4g00252 939 SUPERFAMILY L domain-like 74 370 - -
Vifa4g00252 939 ProSiteProfiles Protein kinase domain profile. 592 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00252 939 Pfam Malectin domain 426 520 IPR021720 -
Vifa4g00252 939 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 35 199 - -
Vifa4g00252 939 Gene3D Ribonuclease Inhibitor 268 391 IPR032675 -
Vifa4g00252 939 MobiDBLite consensus disorder prediction 896 911 - -
Vifa4g00252 939 Gene3D Transferase(Phosphotransferase) domain 1 668 872 - -
Vifa4g00252 939 Pfam Protein tyrosine and serine/threonine kinase 596 862 IPR001245 GO:0004672|GO:0006468
Vifa4g00252 939 FunFam Putative LRR receptor-like serine/threonine-protein kinase 668 875 - -
Vifa4g00252 939 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 563 667 - -
Vifa4g00252 939 CDD STKc_IRAK 598 865 - -
Vifa4g00252 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 714 726 IPR008271 GO:0004672|GO:0006468
Vifa4g00252 939 SUPERFAMILY Protein kinase-like (PK-like) 577 868 IPR011009 -
Vifa4g00252 939 Gene3D Ribonuclease Inhibitor 200 267 IPR032675 -
Vifa4g00252 939 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 878 - -
Vifa4g00252 939 Gene3D Phosphorylase Kinase; domain 1 562 667 - -
Vifa4g00252 939 MobiDBLite consensus disorder prediction 918 933 - -
Vifa4g00252 939 Pfam Leucine rich repeat 281 340 IPR001611 GO:0005515
Vifa4g00252 939 Gene3D Ribonuclease Inhibitor 35 199 IPR032675 -
Vifa4g00252 939 Gene3D - 424 526 - -
Vifa4g00252 939 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515
Vifa4g00252 939 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 200 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00252 Vifa-Chr4 50276554 50283964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00252 7 930 Receptor kinase-like Gene Family AT1G53440 52.982 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00252 PK_Tyr_Ser-Thr 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00252 - - gmx:100784920 1217.22