Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00223 ATGTCAGAAGAAGTTGTTTCTCATGCCCTTGAAACCATTATTGAAGAAGAACATGTTGCACCAAAAGTTGAAAAAGTTAATGACACAGATACATCTAGCCATTATGGTCTAGATTCAGGATTCTACATGTCATCTTTTACAGCAACAATTTTCGTTGTTTCCCTTGTCACTCTTGGAGTTTTACTTATTACTTTGCTGGTTTCTTTGGTGATTATGCTGCAATCATGTCAAAGTAAAAGTACTGGAGTTATTGAACTTGTGAATATGAATAATTACTACAGTTATTGCAGGGTGTATTCTCTGCATGCTGAGATCAATAGGTTAGAGAGATATGATCTTCCAAACATATGTAGAGATCTGACTATACATTATATCAAAGGAGGGCATTATGCCAAAGAGTTGAATTTAATTGTGTCTATGATCGATGATTACTTCAAGAATCTGAGACCTTCAGACAATGGTTTGGATGTGGTGTTGTTGGATATAGATGATATTGTTCCTCCAAATTCGTATCAGAGGTTTCATAGGGACGGCATTAGCAACTGTGTCAAAGAGGCAAAACATGTAAAGCTCATGTTTGTTTTAAGATTATACATGAACCTTCAAACTGATGGGTGGCCTATAATTTTGGTATCAAGAGAACCTGAAACGTACCAAAATGTCACCATTAATCATCTTGTTTCTGCAGGATTTAGAGGTTGGTCTTCCTTGATGATGAGAACAGAAGATTCAGAGTCTACTAAAGGAAATGAGTACTTTTCTAGACGTCTGCTTTCGTATCCATCAGGTCATTTCTTCCCTGCAGCTGATCAGGTCGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGCGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGGCAATCAAAGACACTATTAAGAAGATGTTTAAGGACAATTACCTCAACTTATACACAACTGATGTGGATACTACAGGTTGGATACACACCAAGTGTGGCTTTCCAAGCATGGAAGAAAGCATATTAGATCAGTTGAATGAAGAGTTGAAAGAGAAAATAAAGAATGATGTTTATGACATGGCTCCTTGGAAATCTCCAAGTCCAGATGGATACCGTCCATTTAAGGAACATGTTCAGTCAGAAGTTTTTGGATATAATGCTTGTAATACCTCCACCAAGAACAAGGATATAGAGGATCATTGGAAAGGCATTTGGAATCTGAGTGTTACTAAAAGAATAAGGGTTTTTGTGTGGATGATATATCATAATGGAATCAAAACCAACCAATATCTAAACCACTTGAATCTTCCAGATAATTTGTGTGATTACTGTGATGGAAAATGTAGTAGTGTTGTAGCTGAGCTTTGGTGA 1386 0.3737 MSEEVVSHALETIIEEEHVAPKVEKVNDTDTSSHYGLDSGFYMSSFTATIFVVSLVTLGVLLITLLVSLVIMLQSCQSKSTGVIELVNMNNYYSYCRVYSLHAEINRLERYDLPNICRDLTIHYIKGGHYAKELNLIVSMIDDYFKNLRPSDNGLDVVLLDIDDIVPPNSYQRFHRDGISNCVKEAKHVKLMFVLRLYMNLQTDGWPIILVSREPETYQNVTINHLVSAGFRGWSSLMMRTEDSESTKGNEYFSRRLLSYPSGHFFPAADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGAIKDTIKKMFKDNYLNLYTTDVDTTGWIHTKCGFPSMEESILDQLNEELKEKIKNDVYDMAPWKSPSPDGYRPFKEHVQSEVFGYNACNTSTKNKDIEDHWKGIWNLSVTKRIRVFVWMIYHNGIKTNQYLNHLNLPDNLCDYCDGKCSSVVAELW 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00223 461 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 59 255 - -
Vifa4g00223 461 Pfam LSD1 zinc finger 277 301 IPR005735 -
Vifa4g00223 461 Pfam zinc-binding in reverse transcriptase 394 451 IPR026960 -
Vifa4g00223 461 NCBIfam zinc finger domain, LSD1 subclass 274 302 IPR005735 -
Vifa4g00223 461 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 88 247 IPR005519 -
Vifa4g00223 461 Gene3D - 91 259 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00223 Vifa-Chr4 44631405 44635030 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa4g00223 Acid_phosphat_B 3.2e-11 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00223 - - gmx:100798657 317.775