Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00216 ATGACCATTTTTCTGGCCATGCTACTTATTATATCTATGTCCAAATTATCCTATGGAGCTGATGATACTATTACCCAATCAGGTTCACTTTCTGATGGAAGCACCTTGATTTCCAAAGATGAGACCTTCGAGTTGGGTTTCTTCAGTCCCGGTAGTTCCCCATACCGCTATGTTGGAATTTGGTACAAAAACATCCCTGTTCAAACTGTTGTTTGGGTTGCAAACCGTGATGATCCTATCAAAGACAACAACTCAAGCAAGTTGATCATAAACAAACAAGGTAATCTCGTTCTTCTCAACAGCAATCAGTCTCTTCTATGGTCAACAAACACAACAAAGAAGACTTCAACTCCAGTTGTCCAGCTTCTCAACAACGGAAATTTAGTGATCAGAGACGAGAAAGACAGTTCAGCTGATGAAGATAGTTTCTTGTGGCAGAGCTTTGATTATCCTACTGATACTATGTTACCTGGAATGAAGTTCGGATGGGACAAGAAAAGTGGTATTAATCGACGTATCACTGCATGGAAGAATTGGGAAGATCCATCATCAGGTGATTTTACTTCTTCATTTGTTAGACTTGACACAAATCCTGAAATAATGTTTTGGAAAGGTTCGGTTGAAATATACAGAATAGGAGCAATGATTGGTGTTATGTCTAGTGGTCTTATGTCTATGGGAGTATCTGGGTTAAGGACTAACCCGCTTTTTAACTACGACTTTGTAAGAAATGAAGAACAAGTTTATTATATGTACACACTTAAAAACAGTTCTGTGATTTCCATAATTGTTTTGAACCAAACGCTTTTGGTTCGTCAACGTCTCATATGGATTCCGGAATCCAAAACATGGAATCTTTACCAGAACCTGCCACAAGATAGGTGTGATGATTATAATGTTTGTGGTGCGAACGGAGTTTGTGTCATTGGTGGATCACCGATTTGTCAGTGTTTAGAAGGATTTAAACCAAAATCGCCTCATCGGTGGAATGCAATGGATTGGACACAGGGTTGTGTAAGAAGTGGAAATTGGACATGTGGAGTCGAGAATAGAGGCGGATTTCGTAGAGTTGTTGGAATGAAGTTGCCGGATACTACAAACTATTGGATTGATGAAAATATGACACTTGATCAATGCAAGATCAAATGTTTGCAGAATTGTTCATGCACAGCTTACTCAGGCTTAGGTAAGGGGAACATTGGTTGTTCCATTTGGTTGGATGATCTTAAAGATTTGAGAGTTACAGATGCTGACTTGGACTTATATCTTCGAACCGATGTTTCAGATATCGATGATAAACGTGGGCGCTCAAAAAAGGTTATCTTTGCAGTTTCAGCAATTGTTTCACTAGTTATTGTGACATTGTTGGCTTTCTTCATATATAGAACAAAGATGAAGTATAAAGTAAACATTGAGTGGAAGGAAGACAGCAGTGAATATGATCATGATGAATTAGAGATTCCTTTCTTTGATCTTACTACAATCTTAAATGCCACAAATAATTTCTCAATTGAGAACAAACTTGGCGAAGGGGGTTTTGGACCGGTATATAAGGGAAAATTGGTTGATGGCCAAGAAGTTGCAGTTAAAAGGCTATCTTGGAGTTCTGGACAAGGAATAAAAGAATTTAAAAATGAAGTTATATTATGTGCTAAGCTTCAACATCGAAATCTTGTCAAACTTGTTGGTTGTTGCATTGAAAAAGATGAGAAAATGCTGGTTTATGAATACATGTCAAACACAAGCCTTGATTCATTCATTTTTGATGCAACTCAAAGTAAATCATTAAATTGGCCTTTGCGTTTTAACATCTTACATGGAATTGCACGAGATTTTGGTCTGGCTAAAATGTGTGGAGGTGACCAAATTGAAGGAAAAACAAATCGAATAATTGGTACATACGGTTATATGGCGCCTGAATATGCCATTGACGGATTATTCTCCATTAAATCAGATGTATTTAGTTTTGGTGTATTATTGCTAGAAGTTATAAGTGGAATTAAAAATAGAACACATACCTTCCATCGACATGATCACAATCTTATTGGACATGCGTGGAGACTGTGGAAAGAGGGAACTATACACACAATGATTGATGAAAACTTGAAGGACACGTGTATTCTATACGAAGCTTTGCGGTGTATTCAAATAGGTCTTTTATGTTTACAACATCATCCAGATGATCGACCAGACATGACATCTGTGCTTGTGATGTTGAAAAGTAGTAATACTTTACCTCAACCACAAGAGCCAAGTTACTTATTTAAAATAAAATCATTAGAAAGAGAACTTTTTTCTTATGAAAAAGAATCATCATCTTCAATAAATCAAGTAACTATCTCATTATTAGATGCTAGGTAG 2361 0.3685 MTIFLAMLLIISMSKLSYGADDTITQSGSLSDGSTLISKDETFELGFFSPGSSPYRYVGIWYKNIPVQTVVWVANRDDPIKDNNSSKLIINKQGNLVLLNSNQSLLWSTNTTKKTSTPVVQLLNNGNLVIRDEKDSSADEDSFLWQSFDYPTDTMLPGMKFGWDKKSGINRRITAWKNWEDPSSGDFTSSFVRLDTNPEIMFWKGSVEIYRIGAMIGVMSSGLMSMGVSGLRTNPLFNYDFVRNEEQVYYMYTLKNSSVISIIVLNQTLLVRQRLIWIPESKTWNLYQNLPQDRCDDYNVCGANGVCVIGGSPICQCLEGFKPKSPHRWNAMDWTQGCVRSGNWTCGVENRGGFRRVVGMKLPDTTNYWIDENMTLDQCKIKCLQNCSCTAYSGLGKGNIGCSIWLDDLKDLRVTDADLDLYLRTDVSDIDDKRGRSKKVIFAVSAIVSLVIVTLLAFFIYRTKMKYKVNIEWKEDSSEYDHDELEIPFFDLTTILNATNNFSIENKLGEGGFGPVYKGKLVDGQEVAVKRLSWSSGQGIKEFKNEVILCAKLQHRNLVKLVGCCIEKDEKMLVYEYMSNTSLDSFIFDATQSKSLNWPLRFNILHGIARDFGLAKMCGGDQIEGKTNRIIGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEVISGIKNRTHTFHRHDHNLIGHAWRLWKEGTIHTMIDENLKDTCILYEALRCIQIGLLCLQHHPDDRPDMTSVLVMLKSSNTLPQPQEPSYLFKIKSLERELFSYEKESSSSINQVTISLLDAR 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00216 786 Pfam Domain of unknown function (DUF3403) 744 786 IPR021820 GO:0004674
Vifa4g00216 786 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 182 IPR036426 -
Vifa4g00216 786 Pfam PAN-like domain 348 411 IPR003609 -
Vifa4g00216 786 Pfam S-locus glycoprotein domain 226 325 IPR000858 GO:0048544
Vifa4g00216 786 Gene3D Transferase(Phosphotransferase) domain 1 611 752 - -
Vifa4g00216 786 ProSiteProfiles Bulb-type lectin domain profile. 21 143 IPR001480 -
Vifa4g00216 786 CDD EGF_CA 293 325 - -
Vifa4g00216 786 PIRSF SRK 611 786 IPR024171 GO:0004674
Vifa4g00216 786 PIRSF SRK 1 610 IPR024171 GO:0004674
Vifa4g00216 786 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Vifa4g00216 786 Gene3D - 16 148 IPR036426 -
Vifa4g00216 786 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 729 - -
Vifa4g00216 786 SMART blect_4 27 151 IPR001480 -
Vifa4g00216 786 SUPERFAMILY Protein kinase-like (PK-like) 486 760 IPR011009 -
Vifa4g00216 786 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 148 - -
Vifa4g00216 786 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 619 744 - -
Vifa4g00216 786 CDD B_lectin 27 151 IPR001480 -
Vifa4g00216 786 SMART ntp_6 349 425 IPR003609 -
Vifa4g00216 786 ProSiteProfiles PAN/Apple domain profile. 346 426 IPR003609 -
Vifa4g00216 786 ProSiteProfiles Protein kinase domain profile. 502 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00216 786 Pfam Protein tyrosine and serine/threonine kinase 611 736 IPR001245 GO:0004672|GO:0006468
Vifa4g00216 786 Pfam Protein tyrosine and serine/threonine kinase 503 603 IPR001245 GO:0004672|GO:0006468
Vifa4g00216 786 Pfam D-mannose binding lectin 69 177 IPR001480 -
Vifa4g00216 786 CDD PAN_AP_plant 353 425 - -
Vifa4g00216 786 Gene3D Phosphorylase Kinase; domain 1 462 577 - -
Vifa4g00216 786 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00216 Vifa-Chr4 42698147 42701671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00216 450 786 Receptor kinase-like Gene Family AT4G23150 41.755 1.92e-89 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00216 PK_Tyr_Ser-Thr 1.7e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00216 - - gmx:100790436 1021.15