Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00215 ATGACCATTTTTCTGGCCATGCTAGTTATTATATCTATGTCCAAATTATCCTATGGAGCTAATGATATTATTACCCAATCAGATTCACTTTCTGATGGAAGCACCTTGATTTCCAAAGATGAGACCTTCGAGTTAGGTTTCTTCAATCCCGGTAGTTCCCCATACCGCTATGTTGGAATTTGGTACAAAAACATCCCTGTTCAAACTGTTGTTTGGGTTGCAAACCGTGATAATCCTATCAAAGACAGCAACTCAAGCAAGTTGATCATAAACAAACAAGGCAATCTGGTTCTTCTCAACAGCAATCAGTCTCTTCTATGGTCAACTAACACAACAAAGAAGTCTTCAACTCCAATTGTCCAGCTTCTCGACAACGGAAATTTAGTGATCAGAGATGAAAGTGATGAAGAGAGTTTCTTATGGCAGAGCTTTGACTATCCTACTAATACGTTATTACCAGAAATGAAAATTGGATGGGACAAGAAAACTGGTATTAATAGGCTACAAACTGCGTGGAAAAATTGGGAAGATCCATCTTTAGGTGATTTTACATCATCAATGAGTCTTAGTAATAATCCAGAAGTGGTTGTTTTGAAAGGTTCAAGTGAGTTCTACAGAACAGGACCTATGATTGGTACTACGTCTAGTGGAGTTTATGGGATGCAAGATAACCCAATTTTTAAATCAGAGGTTGTAAGCAATGAAGATGAAGCGTATTTTTTGTTCACCCTAAAGAACAAATCTGTGATTTCCATAGTTGTTTTAAATCAGACTCTTATGCTTCTTCAACGCCTTGTATGGATTCCTGCATCTAGAAAATGGAGTAATTACTTGAACCTACCACATGATACTTGTGATGGTTATAATATTTGTGGACCATATGGGAAATGTGTGATTGACTCATCACCAATTTGTCAGTGTTTGGATGGGTTTAAGCCAAAATCACCCCAACAGTGGAGCACAATGAACTGGGCAGATGGATGTGTGCACACTGGAAATTGGAGCTGTGGAATCAAGAGTAGGGACGGTTTTCTTAAAGTTACTGGAGTGAAGTTGCCAGATACTACAAATACATGGGTTGATGTTAATATGACACTTAATGATTGCAAGCTCAAATGTCTGCAAAATTGTTCCTGCACAGCTTACTCAAGCTTCACCTCAAATGAAGATAGTGGTGGCTGTACCATATGGTTTAATGATCTTAAAGATTTGAGAGATTCAGATTCTCAGAGAAACCTATATGTTCGAATTGATGCATCAAATATAGGGGATAAACATGATTATACAAAAATGGCTATCCTGGTGGTTTCGATCATTGCTTTTGCATTCATTGTGATTCTATTGACACTATACATTTATAAAAAAAAGATAAAGAACAAAGAAAACAAAAATGAAGGTGAGCATTATAATTTAGACCTTCCTTGCTTTGATCTTGCTACAATATTTGAGGCCACAGATAATTTCTCAAATGTTAACAAATTGGGCGAAGGTGGTTTTGGACCGGTCTACAAGGGTAAGTTGCAAGATGGTCAAGAAATTGCAGTCAAAAGACTTTCAAGGAGTTCTGGACAAGGATTGAATGAATTCACGAACGAAGTTATTTTATGTTCTAAACTTCAACATCGAAATCTTGTTAAGATAGTTGGCTATTGCGTTGAAAGCGATGAAAAAATGTTGATCTATGAATACATGTCGAATACAAGCCTAGATTCATTTATTTTTGATCCAATTCAAAGTAAAGTATTAGATTGGCCTATGCGTTTGAACATTTTGTATGGAATTGCCCGAGGTCTTCTATATCTACATCAAGACTCAAGGTTAAGAATAGTACATAGAGATTTGAAAGCGAGCAATATTTTATTAGACCAATATATGAATCCAAAAATTTCAGATTTTGGTCTTGCTAAAATGTGTGGAGATGACCAAATAAAAGGGAAAACAAGTCGAATAGTTGGTACATATGGTTATATGGCACCAGAATATGCAACTGATGGATTATTCTCAATTAAATCAGATGTATTTAGTTTCGGTGTCTTATTGCTAGAACTTATAAGTGGAAAGAAAAACAGAACCCTTACCTTCAATCAAAATGATCATAATCTTATTGCACAAGCATGGAGATTGTGGAAAGAGGGCGTTTTATACTCATTGATTGATGATAGTTTGACAGACACATGTATTCAAAATGAAGCTTTACGGTGCATTCAAATTGGACTTTTATGTTTGCAGCATCATCCTGACGATAGGCCAAATATGACATCTGTTGTTCTGATGTTGAGTAACAATAATATTTTACCTCTACCACATGAACCAGGTTATTTATATAAAAACATACGAGAGGAAGGAGAAGTTTCTTCCGAAATACAAACATCTTCTTCAATAAATAATGTAACTATCTCACAATTAGATTCAAGATAA 2418 0.3565 MTIFLAMLVIISMSKLSYGANDIITQSDSLSDGSTLISKDETFELGFFNPGSSPYRYVGIWYKNIPVQTVVWVANRDNPIKDSNSSKLIINKQGNLVLLNSNQSLLWSTNTTKKSSTPIVQLLDNGNLVIRDESDEESFLWQSFDYPTNTLLPEMKIGWDKKTGINRLQTAWKNWEDPSLGDFTSSMSLSNNPEVVVLKGSSEFYRTGPMIGTTSSGVYGMQDNPIFKSEVVSNEDEAYFLFTLKNKSVISIVVLNQTLMLLQRLVWIPASRKWSNYLNLPHDTCDGYNICGPYGKCVIDSSPICQCLDGFKPKSPQQWSTMNWADGCVHTGNWSCGIKSRDGFLKVTGVKLPDTTNTWVDVNMTLNDCKLKCLQNCSCTAYSSFTSNEDSGGCTIWFNDLKDLRDSDSQRNLYVRIDASNIGDKHDYTKMAILVVSIIAFAFIVILLTLYIYKKKIKNKENKNEGEHYNLDLPCFDLATIFEATDNFSNVNKLGEGGFGPVYKGKLQDGQEIAVKRLSRSSGQGLNEFTNEVILCSKLQHRNLVKIVGYCVESDEKMLIYEYMSNTSLDSFIFDPIQSKVLDWPMRLNILYGIARGLLYLHQDSRLRIVHRDLKASNILLDQYMNPKISDFGLAKMCGDDQIKGKTSRIVGTYGYMAPEYATDGLFSIKSDVFSFGVLLLELISGKKNRTLTFNQNDHNLIAQAWRLWKEGVLYSLIDDSLTDTCIQNEALRCIQIGLLCLQHHPDDRPNMTSVVLMLSNNNILPLPHEPGYLYKNIREEGEVSSEIQTSSSINNVTISQLDSR 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00215 805 ProSiteProfiles Bulb-type lectin domain profile. 21 143 IPR001480 -
Vifa4g00215 805 CDD EGF_CA 283 315 - -
Vifa4g00215 805 Pfam Protein tyrosine and serine/threonine kinase 491 757 IPR001245 GO:0004672|GO:0006468
Vifa4g00215 805 Gene3D - 16 144 IPR036426 -
Vifa4g00215 805 SMART serkin_6 488 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00215 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 453 563 - -
Vifa4g00215 805 Pfam S-locus glycoprotein domain 205 315 IPR000858 GO:0048544
Vifa4g00215 805 SUPERFAMILY Protein kinase-like (PK-like) 471 785 IPR011009 -
Vifa4g00215 805 Gene3D Phosphorylase Kinase; domain 1 450 563 - -
Vifa4g00215 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Vifa4g00215 805 CDD STKc_IRAK 494 759 - -
Vifa4g00215 805 ProSiteProfiles PAN/Apple domain profile. 336 418 IPR003609 -
Vifa4g00215 805 SMART blect_4 27 147 IPR001480 -
Vifa4g00215 805 ProSiteProfiles Protein kinase domain profile. 488 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00215 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 17 144 - -
Vifa4g00215 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 564 766 - -
Vifa4g00215 805 Pfam D-mannose binding lectin 69 173 IPR001480 -
Vifa4g00215 805 ProSiteProfiles EGF-like domain profile. 281 317 IPR000742 -
Vifa4g00215 805 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 750 - -
Vifa4g00215 805 CDD B_lectin 27 147 IPR001480 -
Vifa4g00215 805 CDD PAN_AP_plant 335 417 - -
Vifa4g00215 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 209 IPR036426 -
Vifa4g00215 805 PIRSF SRK 1 805 IPR024171 GO:0004674
Vifa4g00215 805 Pfam PAN-like domain 338 403 IPR003609 -
Vifa4g00215 805 SMART ntp_6 339 417 IPR003609 -
Vifa4g00215 805 Gene3D Transferase(Phosphotransferase) domain 1 564 765 - -
Vifa4g00215 805 Gene3D Hepatocyte Growth Factor 335 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00215 Vifa-Chr4 42443106 42446483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00215 433 773 Receptor kinase-like Gene Family AT4G23230 51.585 4.81e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00215 PK_Tyr_Ser-Thr 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00215 - - tpra:123915292 1066.22