Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00213 ATGACCATTTTCCATGCCATGCTTGTTGTTACCGAGTTACTATTACTCTTGTCCAAATTATCCTATGGAGCTGATGATACTATTACCCAATCAGATTCACTTTCTGATGGAAGCACCTTGATTTCCAAAGATGAGACCTTCGAGTTAGGTTTCTTCAATCCCGGTAGTTCCCCATACCGCTATGTTGGAATTTGGTACAAAAACGTCCCTGTTCAAACTGTTGTTTGGGTTGCAAACCGTGATAATCCTATCAAAGACAACAACTCAAGCAAGTTGATCATAAACAAACAAGGTAATCTCGTTCTTCTCAGCAGCAATCAGTCTCTTCTATGGTCAACTAACACAACAAAGAAGACTTCAACTCCAATTGTCCAGCTTCTCAACAACGGAAATTTAGTGATCAGAGACGAGAAAGACAGTTCAGCTGATGAAGATAGTTTCTTGTGGCAGAGCTTTGACTATCCTACTGATACATTATTACCAGAAATGAAGAATGGATGGGACAAGAAAACCGGTATTCTTAGAATATTTACTGCATGGAAAAACTGGGACGATCCATCTTCAGGTGACTTTACTGCATCCATGAGACTTACGAACAATCCTGAAACGGCTATTTGGAAGGGCTCGACTGAGTTCTATAGATCAGGGCCTCTGACTGGTGGTACGTCTAGTGGAGCTTATGAGATGAAGGTTAACCCACTTACTAATTTAGAGCTTGTAAACAATGAAGAGCAAGTGTATTATATGTACACCCTAAAGAACAAATCTGTGTTTTCCATACTTGTTTTAAATCAGACACTTTTGCTTCTTCAACGCCTTATATGGATTCCTGATTCTAGAGTATGGAGTAATTACTTGAAACTACCACATGATGCTTGTGATGCTTATAATGTTTGTGGACCATATGGAAAATGTGTGATTGACGCATCACCAATTTGTCAGTGTTTGGATGGGTTTAAGCCAAAATCAGCGCAACAGTGGAGCACAATGAACTGGGCAGATGGATGTGTGCGTACTGGAAATTGGAGCTGTGGAATCAAGAGCAGAGACGGTTTTCTTAAAGTTAGTGGAGTAAAGTTGCCAGATACTGCAAATACATGGGTTGATGTTAATATGACACTTGATGATTGCAAGCTCAAATGTTTGCAAAATTGTTCCTGCACAGCTTATTCAAGCTTGGACCCAAATACAGACAGCGGCGGTTGTTCCTTATGGTTTAATGATCTTAAAGATTTGAGAGTTATAGAATCTAGCAGAAACTTGTATGTTCGAATGGATGCATCAAATATAGGTGATAAACATGAGCATACAAAAACAGCTATCTTGTTAGTTTCAATCATTGTTTCTGCAGTCATTGTGATGCTGTTGACCCTCTACATTAGTAGAAAAAAGAGAAAGAACAGAGAAAACAATAATGAAGATGAGCATTATGATTTAGACCTCCCTTACTTTGATCTTGCTACAATAGTTAAGGCCACGAATAACTTCTCAGAGGATAATAAATTGGGCGAAGGTGGTTTTGGACCGGTCTACAAGGGTAAGTTGCAAGATGGTCAAGAAATTGCAGTCAAAAGGCTTTCATGGAGTTCTGGACAAGGATCAAAAGAATTTAGGAATGAAGTAATTTTATGTTCTAAACTTCAACATCGAAATCTTGTTAAGATACTTGGTTATTGTGTTGAAAGCGGTGAAAAAATGTTGGTCTATGAATACATGTCAAATAAAAGCCTAGATTCATTTATTTTTGATCAAATTCAAAGTAAATTATTAGATTGGCCTATGCGTTTTAACATTTTGTACGGAATTGCTCGAGGTCTTCTTTATCTACATCAAGATTCAAGGTTAAGAATCATACATAGAGATTTGAAAGCCAGCAATATTTTATTAGACAGAGATATGAATCCAAAAATTTCAGATTTTGGTCTTGCTAAAATGTGTGTAGGTGACCAAATAGAAGCAACAACAAATCAAATAGTTGGTACATATGGTTATATGGCACCAGAATATGCCATTGACGGATTATTCTCAGTTAAATCAGATGTATTTAGCTTTGGTGTCTTATTGCTTGAACTTATAAGTGGAAAGAAAAACAGAACCCTTACCTATTATCAAGACGATCACAATCTTATTGGACATGCATGGAAGTTATGGAAAGAGGATAACATACAGTCACTGATTGATGATAATTTGAAAGATACGTGTATTCTTTATGAAGCTTCACGATGTATTCAAATAGGGCTTTTGTGTCTGCAACATCATCCTGATAATAGGCCAAATATGACATCTGTTGTTGTGATGTTGAATAGTAATAATAATACTTTACCTCTACCACATGAACCAGGTTATCTATATACAGAAATACGAAGCATAGGAGAAGCTTCATCCAAAAGACAAATTTCTTCTTCAATAAATAATGTAACTATGTCACAGTTAGATGCAAGATAG 2445 0.3673 MTIFHAMLVVTELLLLLSKLSYGADDTITQSDSLSDGSTLISKDETFELGFFNPGSSPYRYVGIWYKNVPVQTVVWVANRDNPIKDNNSSKLIINKQGNLVLLSSNQSLLWSTNTTKKTSTPIVQLLNNGNLVIRDEKDSSADEDSFLWQSFDYPTDTLLPEMKNGWDKKTGILRIFTAWKNWDDPSSGDFTASMRLTNNPETAIWKGSTEFYRSGPLTGGTSSGAYEMKVNPLTNLELVNNEEQVYYMYTLKNKSVFSILVLNQTLLLLQRLIWIPDSRVWSNYLKLPHDACDAYNVCGPYGKCVIDASPICQCLDGFKPKSAQQWSTMNWADGCVRTGNWSCGIKSRDGFLKVSGVKLPDTANTWVDVNMTLDDCKLKCLQNCSCTAYSSLDPNTDSGGCSLWFNDLKDLRVIESSRNLYVRMDASNIGDKHEHTKTAILLVSIIVSAVIVMLLTLYISRKKRKNRENNNEDEHYDLDLPYFDLATIVKATNNFSEDNKLGEGGFGPVYKGKLQDGQEIAVKRLSWSSGQGSKEFRNEVILCSKLQHRNLVKILGYCVESGEKMLVYEYMSNKSLDSFIFDQIQSKLLDWPMRFNILYGIARGLLYLHQDSRLRIIHRDLKASNILLDRDMNPKISDFGLAKMCVGDQIEATTNQIVGTYGYMAPEYAIDGLFSVKSDVFSFGVLLLELISGKKNRTLTYYQDDHNLIGHAWKLWKEDNIQSLIDDNLKDTCILYEASRCIQIGLLCLQHHPDNRPNMTSVVVMLNSNNNTLPLPHEPGYLYTEIRSIGEASSKRQISSSINNVTMSQLDAR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00213 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 572 775 - -
Vifa4g00213 814 Pfam PAN-like domain 346 411 IPR003609 -
Vifa4g00213 814 Pfam D-mannose binding lectin 73 181 IPR001480 -
Vifa4g00213 814 SMART ntp_6 347 425 IPR003609 -
Vifa4g00213 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 152 - -
Vifa4g00213 814 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Vifa4g00213 814 Pfam Protein tyrosine and serine/threonine kinase 499 766 IPR001245 GO:0004672|GO:0006468
Vifa4g00213 814 CDD PAN_AP_plant 343 424 - -
Vifa4g00213 814 Gene3D Transferase(Phosphotransferase) domain 1 572 775 - -
Vifa4g00213 814 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Vifa4g00213 814 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
Vifa4g00213 814 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Vifa4g00213 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Vifa4g00213 814 SMART blect_4 31 155 IPR001480 -
Vifa4g00213 814 CDD EGF_CA 291 323 - -
Vifa4g00213 814 Gene3D - 20 152 IPR036426 -
Vifa4g00213 814 ProSiteProfiles Protein kinase domain profile. 496 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00213 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Vifa4g00213 814 Gene3D Hepatocyte Growth Factor 343 424 - -
Vifa4g00213 814 SUPERFAMILY Protein kinase-like (PK-like) 477 788 IPR011009 -
Vifa4g00213 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Vifa4g00213 814 SMART serkin_6 496 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00213 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 758 - -
Vifa4g00213 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 460 571 - -
Vifa4g00213 814 Gene3D Phosphorylase Kinase; domain 1 457 571 - -
Vifa4g00213 814 CDD STKc_IRAK 502 768 - -
Vifa4g00213 814 CDD B_lectin 31 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00213 Vifa-Chr4 41515591 41518981 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00213 441 782 Receptor kinase-like Gene Family AT4G23230 53.314 7.71e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g00213 PK_Tyr_Ser-Thr 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00213 - - tpra:123915292 1080.86