Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00212 ATGGCTGAAGAACAGTTTCAAGCTAGTGGAAATTGGTGGGAGACACCAGCTAGAAACATGAGATTTGAAAGTGTTGAACAACAACAACAGCAACAACAACAACAACAATCTTCTTCCTTTGGTGGTTGGCAGCAGCAGCAACAACATCATGATACTATGTCTGCTTCCGGTAGTTCTTCGGTTGTTTTTCATGATACTACTCAAAAGCTTCATCCTTCTGATTCTTCTACTTCAAATAATGACAACAATACCTTGCATATGATGAATTTGGGTCTTTCGTCTCAAACCATTGATTGGAATCAAACATCTTTATTAAGAAGTGACAAGGCTTCAGAAGGAAGTTTCAGGTCTATGCTACAAGAGAATTTGAACTCATCAAGCACAAATTTCGATCAAGAAACCGGATTGAGTCATCATCAAGTTAATTGGAGACAAGAATCTTCTAATAACAATGAATTCAAGCAAGTGAATAGAGGTTTCTCTTTGGATCAAACACAGTTTAGTCCTCAATATAGTTCAGGAGATAGTAACATGATAAGCCAAATGGATTCTTCATCTTTATATGGTAACCCTTCAATGTTACAAGGACTTTTAGGAACTGAAACCAATCAAATTCAACCTCAACACGGTTCCATGAATTTTCCTTACTCATCAACAAGCTATGCTTTGAGTTCAAATGATTTAGTTCCTTCTTGGTCTAAAATACCTCAACAAAAACAACAACAACAACAACAACAACCAAATAACCAGTTGCATTTCACCAATAATGCTCCTTTCTGGAATGCTTCAGAGTCTACTATTAATAAGGATTCTTCATCTAGCTTCTTGCCTCCATTTACCACACCAAATTTCGATGCTCAAACAAAGAATATATCTGAAGGTAGGGACCCAAGTGGTGCGGTGAAGAAAAGTGGGAGTGAGCCTGCACCAAAAAGGTCCAGAAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTAAGAAAAGAGAAAATGGGGGACAGAATCACTGCACTTCAACAATTGGTTTCACCTTTTGGAAAAACTGATACAGCCTCAGTGCTCTCTGAAGCAATTGAATATATCAAGTTTCTTCATGAACAAGTGACTATTTTAAGCACACCGTATATGAAAAGTGGTGCTCCAATCCAACATCAACAGGGTTCTGGTAAATCTAAGGAAGTAGAGGGTCCAAAGCAGGATCTTAGGAGCAGAGGGTTGTGCTTAGTACCAGTTTCTAGTACATTTCCAATGACTCATGAACCAACAGTTGAATATTGGACACCAACATTTGGAGGAACTTTCAGATAA 1308 0.3823 MAEEQFQASGNWWETPARNMRFESVEQQQQQQQQQQSSSFGGWQQQQQHHDTMSASGSSSVVFHDTTQKLHPSDSSTSNNDNNTLHMMNLGLSSQTIDWNQTSLLRSDKASEGSFRSMLQENLNSSSTNFDQETGLSHHQVNWRQESSNNNEFKQVNRGFSLDQTQFSPQYSSGDSNMISQMDSSSLYGNPSMLQGLLGTETNQIQPQHGSMNFPYSSTSYALSSNDLVPSWSKIPQQKQQQQQQQPNNQLHFTNNAPFWNASESTINKDSSSSFLPPFTTPNFDAQTKNISEGRDPSGAVKKSGSEPAPKRSRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTILSTPYMKSGAPIQHQQGSGKSKEVEGPKQDLRSRGLCLVPVSSTFPMTHEPTVEYWTPTFGGTFR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00212 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983
Vifa4g00212 435 Gene3D - 325 384 IPR036638 GO:0046983
Vifa4g00212 435 MobiDBLite consensus disorder prediction 233 323 - -
Vifa4g00212 435 SMART finulus 326 370 IPR011598 GO:0046983
Vifa4g00212 435 MobiDBLite consensus disorder prediction 126 150 - -
Vifa4g00212 435 MobiDBLite consensus disorder prediction 233 294 - -
Vifa4g00212 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 382 IPR036638 GO:0046983
Vifa4g00212 435 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 112 416 - -
Vifa4g00212 435 FunFam Transcription factor bHLH123 family 325 387 - -
Vifa4g00212 435 MobiDBLite consensus disorder prediction 21 60 - -
Vifa4g00212 435 CDD bHLH_AtbHLH_like 321 372 IPR045239 -
Vifa4g00212 435 MobiDBLite consensus disorder prediction 379 401 - -
Vifa4g00212 435 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00212 Vifa-Chr4 39668904 39672813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00212 106 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 44.588 2.36e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00212 - - gmx:100778697 551.977