Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00208 ATGGATCTTCTATGCGCCGCATATTCAAATGCCGAAGAAGAAGAAGAAGAAGAACCCAAACGAAAGAAATCATACCATCATACTCCCCCACCGAAACCCTATATCCCTTCCTCTTCATCTTGTACTGTTTCGAACCTCCATACACAAACTCTCATTCCAGGTAGCTATGTTTCCAAACGACAACGCGCTTCTATGTCTTCCATCTCAACTACATCTCTTCCCCTTTCATCGTCTCCATCTTTCACATTATCTGGCAGTATCTCCGAAGCTGATGTACCCCATAACATTTTAGCATTGTTTGGAAGTGAAGCTAAGGGTCGTAAAAATCTTAACTCGATATCTGAAAAGCTATCTGCATCTCTATCTGGACATACAAGAGCTGTCAATGCTATACATTGGTCATCAACTCACCCTCACCTTCTCGCATCTGCTGGGATGGACAATATGGTATGCATTTGGAACGTATGGAGCAGAGATAAGAAGAAAGCATGTGCGCTAAACTTCCACAACGCCGCTGTGAAAGATGTGAAATGGTCTCAACAAGGGCACTTCTTACTTTCTTGTGGATATGATTGCACATCAAGGTTGGTTGATGTTGAAAAGGGGATGGAAACTCAGGTTTTCAAAGAAGATCAAATGGTTGGAGTTATAAAGTTCCACCCAAACAATTCAAATCTCTTCCTTTCTGGGGGATCTAAGGGGCATATCAAACTATGGGATATCAGAACTGACAAAGTTGTGCATAACTATAATCGAAATTTAGGTTCCATTCTAGATGTTGAGTTTACAACAAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAATATCAGTGAGAATTCTATTATCGTTTGGGATGTGTCGAGACAGGTGCCGTTGTCTAATCAGGTTTATGTGGAAGCTTATACTTGTCCTTGCGTTAGGACCCACCCCTTTGATCCAGTTTTTGTTGCTCAATCAAACGGCAATTATGTCGCAATCTTTAGTTCAACCCCTCCATACAGACTCAACAAATATAAGCGATATGAGAACCATGGGGTTTCTGGGTTCCATATTAAGTGTAATTTCAGCTTGGATGGGAAAAAGCTTGCATCTGGCTCTTCAGATGGATCTATATACATATATGATTATCAGTCATCCAAAGTAATTAAGAAAATAAAAGCCTTTGGCCAAGCATGCATGGACATTGCCTTCCATCCAGTTATACCTAATGTTTTTGCTTCATGCTCATGGGATGGAGGTATTTCGGTATTCGAGTAG 1269 0.4082 MDLLCAAYSNAEEEEEEEPKRKKSYHHTPPPKPYIPSSSSCTVSNLHTQTLIPGSYVSKRQRASMSSISTTSLPLSSSPSFTLSGSISEADVPHNILALFGSEAKGRKNLNSISEKLSASLSGHTRAVNAIHWSSTHPHLLASAGMDNMVCIWNVWSRDKKKACALNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLVDVEKGMETQVFKEDQMVGVIKFHPNNSNLFLSGGSKGHIKLWDIRTDKVVHNYNRNLGSILDVEFTTNGKQFISSSDVSGSNISENSIIVWDVSRQVPLSNQVYVEAYTCPCVRTHPFDPVFVAQSNGNYVAIFSSTPPYRLNKYKRYENHGVSGFHIKCNFSLDGKKLASGSSDGSIYIYDYQSSKVIKKIKAFGQACMDIAFHPVIPNVFASCSWDGGISVFE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00208 422 Gene3D - 102 422 IPR015943 GO:0005515
Vifa4g00208 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 155 - -
Vifa4g00208 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 249 IPR001680 GO:0005515
Vifa4g00208 422 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 15 422 - -
Vifa4g00208 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 155 IPR001680 GO:0005515
Vifa4g00208 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Vifa4g00208 422 SMART WD40_4 382 422 IPR001680 GO:0005515
Vifa4g00208 422 SMART WD40_4 243 289 IPR001680 GO:0005515
Vifa4g00208 422 SMART WD40_4 159 198 IPR001680 GO:0005515
Vifa4g00208 422 SMART WD40_4 114 154 IPR001680 GO:0005515
Vifa4g00208 422 SMART WD40_4 201 240 IPR001680 GO:0005515
Vifa4g00208 422 SMART WD40_4 340 379 IPR001680 GO:0005515
Vifa4g00208 422 SUPERFAMILY WD40 repeat-like 105 421 IPR036322 GO:0005515
Vifa4g00208 422 MobiDBLite consensus disorder prediction 1 41 - -
Vifa4g00208 422 ProSitePatterns Trp-Asp (WD) repeats signature. 141 155 IPR019775 -
Vifa4g00208 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 388 IPR001680 GO:0005515
Vifa4g00208 422 Pfam WD domain, G-beta repeat 345 379 IPR001680 GO:0005515
Vifa4g00208 422 Pfam WD domain, G-beta repeat 116 154 IPR001680 GO:0005515
Vifa4g00208 422 Pfam WD domain, G-beta repeat 217 240 IPR001680 GO:0005515
Vifa4g00208 422 Pfam WD domain, G-beta repeat 168 196 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00208 114 378 U-box Gene Family AT1G04510 22.939 4.37e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00208 K24742 - gmx:100790592 633.639